BAC Information

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BAC

Clone NameMSMg01-491K19
Chromosome14 (Build37)
Map Location 86,175,093 - 86,175,792
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668603
Downstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491K19.T7 (MSMg01no491_k19.b1)MSMg01-491K19.TJ (MSMg01no491_k19.g1)
ACCAG569613AG569614
length740750
length of high quality
(start - end)		705 (36 - 740)519 (66 - 584)
definitionCHROMAT_FILE: MSMg01no491_k19.b1 PHD_FILE: MSMg01no491_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:39 2005CHROMAT_FILE: MSMg01no491_k19.g1 PHD_FILE: MSMg01no491_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTAG
CGATTCTCGATATTAACAATTAATTAGTGAGACATGTTTAGCCATTGTCT
ATAGGTACCAATGTGCGATGGTTTATTAGAAATAAAGTTACATCTTATAC
CTAAACAAATCTCCATTTCTGAGGCTGTTTTAAAGAAATCATTTATCAGA
GCTCCGTGGTACAGGTCTATATGCAGCATTTAGGGAGTTAGGGCAGGGTA
ATTGCAAGTTCAAGGTCTCCTTGACCTACAGACTGAATTCAAGGCAAGCA
TGTGGACCCTGATGAGATCAGTCTGAAAATAAAAGGTAAAGGGGAAACTG
CACATGCTCAGTAGCATGGCTAAGGCTCAGAGCCCAATACTGAAGTGAGA
GTAAGAGAAAGAATACATTAAGACTTCAGAGTTTGAACATGGTTTCACCT
TTTTTAGTAAGAGTTTGTAAACACTACAAATTAAAATAATTAAAACATGG
ATAAAAATATACAGTAGGCTAATAAGCATTCATTAAACACGGTGTTTAGA
CATCTTAAAGTATATAAAGATATGGAATCATGCAGTAAAATCTAAGTAGA
TTCTCCTACATATATTTTTTTCTCAAACCTTTATCTATTGTGTCCTTGAA
AAGATGTAAAATTAATGAATCAGGAAAAATAAAGTTAACGATGTTATTAA
TTTTGGTTAAAATAATCTATATTTAGGAAAATGTATTGAN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATGAATGGGTGT
TGGATCCTGTTGAATGCTTTTTCTGCATCTAAGGAGATGATCATGTGGAT
TTTGTCTTTGATTTTGTTTATATAATGGATTACATTGATGGATTTCCGTA
TATTGAACCATCCCTGCACCCCTGGAATAAATCCTACTTGGTCAGGATGG
ATGATTGTTTTAATGTGTTCTTGGATTCGGTTAGTGAGAATTTTATTGAG
TATTTTTGCATCGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCT
TTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGAAATTGTGGCTTCATAG
AATGAGATGGGTAAAGTACCTTCTACTTCTATTTTGTGGAATAGTTTGTG
CAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAA
ACCCATCTGGTCCTGGGCTTTTTTTTTTTTTTTGATTTGGAGACCATTAA
TGACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATCGTTAAAT
TGATCCTGGTTTAAATTTGGTACCTGGTATCTGTCTAGAAATTTTTTCCA
TTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGAT
CTGATGGNGTTTTGGATTTCTTCCGCGGTTGGTGGTATGTCTCCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_k19.b1 MSMg01no491_k19.b1 CHROMAT_FILE:
MSMg01no491_k19.b1 PHD_FILE: MSMg01no491_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:39 2005
         (705 letters)



>mm_chr14_86174889_86175993
          Length = 1105

 Score = 1330 bits (688), Expect = 0.0
 Identities = 697/700 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttagcgattctcgatattaacaattaattagtgagacatgtttagccattgtc 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttagcgattcttgatattaacaattaattagtgagacatgtttagccattgtc 264

                                                                       
Query: 65  tataggtaccaatgtgcgatggtttattagaaataaagttacatcttatacctaaacaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tataggtaccaatgtgcgatggtttattagaaataaagttacatcttatacctaaacaaa 324

                                                                       
Query: 125 tctccatttctgaggctgttttaaagaaatcatttatcagagctccgtggtacaggtcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctccatttctgaggctgttttaaagaaatcatttatcagagctccgtggtacaggtcta 384

                                                                       
Query: 185 tatgcagcatttagggagttagggcagggtaattgcaagttcaaggtctccttgacctac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatgcagcatttagggagttagggcagggtaattgcaagttcaaggtctccttgacctac 444

                                                                       
Query: 245 agactgaattcaaggcaagcatgtggaccctgatgagatcagtctgaaaataaaaggtaa 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaactgaattcaaggcaagcatgtggaccctgatgagatcagtctgaaaataaaaggtaa 504

                                                                       
Query: 305 aggggaaactgcacatgctcagtagcatggctaaggctcagagcccaatactgaagtgag 364
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 aggggaaactgcacatgctcagtagcatggctaaggctcagagtccaatactgaagtgag 564

                                                                       
Query: 365 agtaagagaaagaatacattaagacttcagagtttgaacatggtttcaccttttttagta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtaagagaaagaatacattaagacttcagagtttgaacatggtttcaccttttttagta 624

                                                                       
Query: 425 agagtttgtaaacactacaaattaaaataattaaaacatggataaaaatatacagtaggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agagtttgtaaacactacaaattaaaataattaaaacatggataaaaatatacagtaggc 684

                                                                       
Query: 485 taataagcattcattaaacacggtgtttagacatcttaaagtatataaagatatggaatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taataagcattcattaaacacggtgtttagacatcttaaagtatataaagatatggaatc 744

                                                                       
Query: 545 atgcagtaaaatctaagtagattctcctacatatatttttttctcaaacctttatctatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atgcagtaaaatctaagtagattctcctacatatatttttttctcaaacctttatctatt 804

                                                                       
Query: 605 gtgtccttgaaaagatgtaaaattaatgaatcaggaaaaataaagttaacgatgttatta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtgtccttgaaaagatgtaaaattaatgaatcaggaaaaataaagttaacgatgttatta 864

                                                   
Query: 665 attttggttaaaataatctatatttaggaaaatgtattga 704
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 attttggttaaaataatctatatttaggaaaatgtattga 904


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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