BAC Information

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BAC

Clone NameMSMg01-491L10
Chromosome14 (Build37)
Map Location 71,220,124 - 71,220,627
singlet/doubletsinglet
Overlap genenone
Upstream gene1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2
Downstream geneGfra2, LOC100043132, LOC100043136, LOC668477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491L10.T7 (MSMg01no491_l10.b1)MSMg01-491L10.TJ (MSMg01no491_l10.g1)
ACCAG569643AG569644
length7591,745
length of high quality
(start - end)
502 (61 - 562)---
definitionCHROMAT_FILE: MSMg01no491_l10.b1 PHD_FILE: MSMg01no491_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:42 2005CHROMAT_FILE: MSMg01no491_l10.g1 PHD_FILE: MSMg01no491_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTATACGACTCACTATATGTTCAGGATCCGCGGAATTCTTGGTATCC
TTGTCGTGGTGCAGCTTTGGAATATTGTGACATTTTTAGAAGATGGAGAT
TTACTAGAAAAAGTGGGTAGCTGAAAACCTCAACCTCACTTCCAGTCTGC
TTCTCCTTTCCTGATTATGGCCACAATGTGACCAGTCACACCCTATTCCT
GCCACCAGGCCCTGCTGATGGACTGTATTCCCTCCTAAATAGTGAGCCAC
TGTAATGAGAAGAGTAACTAATACACACAAGCAGTTACTAATAACTGGGT
GAGGAGCTTGGGGGAGAGTTGACTCTCAATTCAAGAACACAAGAGGAAAC
CTGTGCAGTTGGGGAAATTCGCAAAGAAAGCTGGATTCCTCACAAGTAGG
TTTTAGTACCGTTCTATCTTAGTTAGAGTTTCCATTGCTTCGATGAAACA
CCATGACCAAACCAACCTGGGGAGGAAAGGATTTATTTGGCTTCTACTTC
CATGGTACTGTTCATCATCAAAGCAAGTCAGGACAGGAATTCAAACAGAG
CAGGAATCTGAAGACAGGAGCTGTCACAGAAGCCTTTACTGGTGCGCGCC
TCACGGCTTGTTCAGCATGCTTTCTTACAGAAACTGGGACCACAACCTGA
GATTGCTTCACCCACAATGGGCTGGGCCCTCCCTCATCAATCACTAATTG
AGAAAATCTCCTACAGAATTGCCTATAACCCCATCGGAAGTGGAAACTTC
TAGTTTCTT
ACGTAGGATAGGGTAGAAGTGGAAAGAAGTGTGTTCCTCCTCTATTCTCA
CGGGTGGAGCGCGCTGTGGCGGCTCGCGTGTTTCCAGTCTTGATGCGCGG
CGAAGTTCTGTTGATGAGCACTATAGGCTAATAGTAAGTCGTTAAATACG
ATTTGAGACGTTAAGTAGAGTCGAGCAGAGTTCACGTGTATATCTCACGA
TAACCAGCTATATAAGATGAAGACAGCTACTATACTAGAGAATTCATAGA
TTGTTACACGCACCGTGTCGTGCTATGAACACATAATCTAATATCTGTAT
GTATACTGTGAGCTCATGAAGGACGTCATGGTCCACATTATAATTGCATA
TTGTTGTTTACTTNCTGCACCGAAGTAGCCATAACATACGCGCGCCNCGG
CGCACGTGCCATGTATGGACGGTCCGCGCATTATACCTACACTCAACTAA
CCACCTACCACNACATCCCCCTCTCTCACCTCTTCCCTCCACCCGACCAT
ATCGTTCTACGTCTCCTCTTGGCACCTGCTTATGCACTCGTTTCTCGTTA
TTACTCACGCTTGCTACTTATTTCTATTTATATCATCTTGCTATTCTAGT
TTATATATTATACACATATGTCTCTCTTCTCTCGCGTTAGTTGCTGTGAG
CGTTGGGTAGCGATGTGGACTTATTGTCGAGCGCTCAGTGCTCGTGATCA
TGCACCGAGTCGTCGTCGATGCTAAGCCGACTGCTCCATATCACCATATG
ATATGACTCCATATCACTGATTATCTTGATTAGGTGATGATCTATTTCTT
ACGCTGCTGCTACGTCGCATCACTGGATATCTAGGTCTCTGACTCACTCG
CAGCGCACCAGTATACTCCGTCTCTATCTTACTACATGCAATGCATGTGT
CGTGGATTGAGAGTCGTAGGCTGGTGACGTGCACGTACGTGCCTGCAGAT
TGTCACGTGTGCGCTGTCCACCGCGAGTCTTGTCGACCACGCCGCACNTN
TGATCTATCACTGACTACNCATCNGTATATAGTATCGCACGCAAANCTCG
CTATCTATACTGCATGTATCTACTCATATGGATACGACACGCGCGTCTGC
ACACTCTNCTNGTACATCGCCACGATGGAANTACGACTNCTACGTAGACT
CATATATATCAACCGCATCACACNGACCGTGTACTAGCTAGAGCATAATT
CTGCNCAANTGATGANCGAAGAATGTAGANTCATGAGAAGNCAAGATCGA
CTGATAGTATCTGAAGGAGTGACGTGAAAGCGAACACAANGTACTACNTA
TCGACNGCATAGTAGTANTCGACATATATCATCNGACTCATAGATACGAA
GTCATCNAGTCTAGATATNCAAATCTCCTGTCTCCTCGCCGATGTCATCA
NAGAGACTCATCAAGCGCATNCCCACGTCTGGTCATCCACAGTCGTGCAA
CTGTCATCTGACCATGACGTATCATACGCGACGACGANAGCCTACGCTAC
GACTACGACCGAGTCGTTGCGAGATGCTGATTGATACGANAGCTGCAGGC
GCTGACGCTACGCNGTGCNGCAATCGGGTTTCAGTGTGACGATGTCATCT
NCTGCNGNTGTGTGTACTAGTNCTGTGCCACTATGTATATATCGACTANT
CACCAGTTATCACACGTCNTCTGAGTACTTTGTGACTAGTACTANTACAT
CGATGTACTTAAACTTGCCGCATTACTCATATAGCATTCATGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_l10.b1 MSMg01no491_l10.b1 CHROMAT_FILE:
MSMg01no491_l10.b1 PHD_FILE: MSMg01no491_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:42 2005
         (502 letters)



>mm_chr14_71219889_71220791
          Length = 903

 Score =  913 bits (472), Expect = 0.0
 Identities = 496/504 (98%), Gaps = 2/504 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagctttggaatattgtgacatttttagaagatggagatttactagaaaaagtgggtag 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gcagctttggaatgttgtgacatttttagaagatggagatttactagaaaaagtgggtag 680

                                                                       
Query: 61  ctgaaaacctcaacctcacttccagtctgcttctcctttcctgattatggccacaatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctgaaaacctcaacctcacttccagtctgcttctcctttcctgattatggccacaatgtg 620

                                                                       
Query: 121 accagtcacaccctattcctgccaccaggccct-gctgatggactgtattccctcctaaa 179
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 619 accagtcacaccctattcctgccaccaggccctccctgatggactgtattccctcctaaa 560

                                                                       
Query: 180 tagtgagccactgtaatgagaagagtaact-aatacacacaagcagttactaataactgg 238
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 559 tagtgagccactgtaatgagaagagtaactaaatacacacaagcagttactaataactgg 500

                                                                       
Query: 239 gtgaggagcttgggggagagttgactctcaattcaagaacacaagaggaaacctgtgcag 298
           |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 499 gtgaggagctcgggggagagttgactctcacttcaagaacacaagaggaaacctgtgcag 440

                                                                       
Query: 299 ttggggaaattcgcaaagaaagctggattcctcacaagtaggttttagtaccgttctatc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 439 ttggggaaattcgcaaagaaagctggattcctcacaagtaggttttagtagtgttctatc 380

                                                                       
Query: 359 ttagttagagtttccattgcttcgatgaaacaccatgaccaaaccaacctggggaggaaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttagttagagtttccattgcttcgatgaaacaccatgaccaaaccaacctggggaggaaa 320

                                                                       
Query: 419 ggatttatttggcttctacttccatggtactgttcatcatcaaagcaagtcaggacagga 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggatttatttggcttctacttccatggtactgttcatcatcaaagcaagtcaggacagga 260

                                   
Query: 479 attcaaacagagcaggaatctgaa 502
           ||||||||||||||||||||||||
Sbjct: 259 attcaaacagagcaggaatctgaa 236


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space:   439356
Effective search space used:   439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)