BAC Information

Click to search

BAC

Clone NameMSMg01-492G11
Chromosome14 (Build37)
Map Location 104,626,017 - 104,626,373
singlet/doubletsinglet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492G11.T7 (MSMg01no492_g11.b1)MSMg01-492G11.TJ (MSMg01no492_g11.g1)
ACCAG570167AG570168
length711713
length of high quality
(start - end)
389 (316 - 704)59 (236 - 294)
definitionCHROMAT_FILE: MSMg01no492_g11.b1 PHD_FILE: MSMg01no492_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:37 2005CHROMAT_FILE: MSMg01no492_g11.g1 PHD_FILE: MSMg01no492_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCATTATCATGACTCACTGTGCTTCCCTTTTGCTAAAGTCATTT
CTTACTGATTTCTTAAATATTCACAACTTTTATTGCCCTGCCTTGGATAT
TGCCCAGTGGTAGAGCACTTGCCTAGCATGCATGAGACCACACCGTCCCC
CACTCTCTGTCTCTCTGTGAGTCTTTGTCTCGTCTCTCTTTGTCTCTTTG
TCTCTGTATCTCTCTCACATACACACTTCTTAATTTAATATGTAAACACA
CAATTTCATGTTTTAGTGAAAATATTTAGATTGATTAATCTTATTTTATG
TGCATGAGTATGTTGCCTGCACGTATGCATGTGCACCATGAGTGTGTTTG
ATGCCCTGGATGGCAGAAGAGGGGGTCAGATACCTTGGAACTGGAGTTAT
GGACAGTTGTGAGCTGCCACATTAGTGCTGGCAAACCAAGCCTGGGCCCT
CTGCAAAAGCAACAATTGCTCTTAACCGCTGAGCTATCTCTACAGCCCAT
TAAAACTGTTATCTATTAACGTACAGTCAGTTTTTCATGTTTGGCTAAAA
ATAATCAAGTAAACTAGATTTTCCATATTAGCCAAAATTTTTTCTCAAGA
AAGTATGAAGGAGTTGTTAGTGCTTTTCAAACAAGCAGCTACTGTGTTTG
CTCCCCTGTGT
GATCGGGGAGGGCCGGAGGCGCCCGGTTTCGGACGGGGGNGAANNANAGA
AGTTTCCAGACGCGGGAGNNAGNGGGANGGAAGGAACNCCNNCAAANANT
TTATCCCCCGCCAAGCCNGAACANNAGACCAGGGACCGGCAGCCACTNNN
NGNGCCNGGGGGCCCCCCAGGCCCCAGAGACCCCGGCGAGGGNCNCNGCC
CCGAANCCCCAGGCCCCCACACCCGGGTGTTTGCCTACAACAAAATGGCC
TCTGCAGTGGCTCCATATCTAAATTACAGTTATTTGGATATTCCTTTTTT
TTTTAAAGAGCCACACCANCCAGCCCACAGGCCNGAGAATTTATTTCTAC
CATTGCACAGTATATAACTCTCTTGATAAGAAAACTAAGTTTGTGACTTG
TATATTTTGGTATTTTCATAGAACAATGGCTTTTCTTGGTTGATATCACA
GAGCATTGCCCACAGCACCACAATATTGGACATGCTGGATACAGATGGCT
GTGAGCGTTTTCTCAAGTATTAAGGGCTGATGTAACTGGACTTAGGGTAC
CACTTTCCATGCTTTGAAGGGCTTGAATGACCGGACAGGACCCTTTCTTC
CCTTTCTTTCTCTATTTGGTTCCTTCACCGGTCCAAAGAATAGGGATCTC
GACGTTCCACTTTGTTGAGTACTGGCGTATCTTAATCTCCGCCTATCTAC
CCTACCGTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_g11.b1 MSMg01no492_g11.b1 CHROMAT_FILE:
MSMg01no492_g11.b1 PHD_FILE: MSMg01no492_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:37 2005
         (389 letters)



>mm_chr14_104625584_104626373
          Length = 790

 Score =  667 bits (345), Expect = 0.0
 Identities = 354/357 (99%), Gaps = 1/357 (0%)
 Strand = Plus / Minus

                                                                       
Query: 34  tgtgcatgagtatgttgcctgcacgtatgcatgtgcaccatgagtgtgtttgatgccctg 93
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tgtgcatgagtatgttgcctgaacgtatgcatgtgcaccatgagtgtgtttgatgccctg 731

                                                                       
Query: 94  gatggcagaagagggggtcagataccttggaactggagttatggacagttgtgagctgcc 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gatggcagaagagggggtcagataccttggaactggagttatggacagttgtgagctgcc 671

                                                                       
Query: 154 acattagtgctggcaaaccaagcctgggccctctgcaaaagcaacaattgctcttaaccg 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 acattagtgctggcaaaccaagcctgggccctctgcaaaagcaacaattgctcttaaccg 611

                                                                       
Query: 214 ctgagctatctctacagcccattaaaactgttatctattaacgtacagtcagtttttcat 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ctgagctatctctacagcccattaaaactgttatctattaacgtacagtcagtttttcat 551

                                                                       
Query: 274 gtttggctaaaaataatcaagtaaactagattttccatattagccaaaa-ttttttctca 332
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 550 gtttggctaaaaataatcaagtaaattagattttccatattagccaaaaattttttctca 491

                                                                    
Query: 333 agaaagtatgaaggagttgttagtgcttttcaaacaagcagctactgtgtttgctcc 389
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agaaagtatgaaggagttgttagtgcttttcaaacaagcagctactgtgtttgctcc 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 790
Length adjustment: 9
Effective length of query: 380
Effective length of database: 781
Effective search space:   296780
Effective search space used:   296780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)