BAC Information

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BAC

Clone NameMSMg01-492H08
Chromosome14 (Build37)
Map Location 86,706,992 - 86,707,230
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668603, LOC100043301, EG629815
Downstream geneLOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3, EG665324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492H08.T7 (MSMg01no492_h08.b1)MSMg01-492H08.TJ (MSMg01no492_h08.g1)
ACCAG570209AG570210
length713731
length of high quality
(start - end)
512 (75 - 586)240 (75 - 314)
definitionCHROMAT_FILE: MSMg01no492_h08.b1 PHD_FILE: MSMg01no492_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:41 2005CHROMAT_FILE: MSMg01no492_h08.g1 PHD_FILE: MSMg01no492_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGCGCGGA
ATTCTGGTTTTACCTTGAAAATTTTGTTTTTCTAGTTTCTTGAGGTTTTT
TTTTTTTAATTTTGGATATGAGTCCTCTATAAGATGTAGACTTGGCTAAA
ATATTTTTTCATTCTGTAGGCTGGACATTGTCCAATTGACAGTGTCCTTT
GCCTCACAAAAGCTTTTCAGGTTCATGCGGTCCCATTTATTAATTGCTGA
TCTTAATGCCTGAGCTATCTGTGCTCTGTTTAGAAAGTTGTTTTCTGTGC
CTATGAATTCTTTTTCTTTTCCCCACTTTTTCTTTTATTAGGTTCAGTCT
ATCTTTTCTCTGTTGAGGTCTTTGATCTGCTTGGACTTGAGTTTTGTACA
GGGTGATAAATATGGATTTATTTGTATACAGACAGACATCCAATTTGACC
AGAACTATTGTTGAAGATGCCCTCTTTATTGAGGCATGTATTTCTCATGC
CCTTATACAAAATCAGAAGTTTGGTTTATATTTGAGTCTTCAATATAATT
TAACAGATCAACATTGTCTATGCCAACACCATGCATAGATCTGTAGGACA
ACTTTAAATCAGGGGTGTTGATACCTCTATCATTTCTTCCGTGTTCAGAA
TTGTTGTAGCTATCCTGGGCGATGTTTGCTTGTTTGCTCTGATTTTCTAT
ATGAAGTTGAGAA
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACAATTCGGGGATTAAGGAGAATGTAACCCAT
CCTTACACTCACAGCATTCAGGATATAGAGTACTGAGGAAATGCCTTACC
CTAAGAAAGTGGAGTTCATGTGATGTATAGAGGGATGTGACAGCATGAGT
CCATACACTCCATTGAGCACTCTTCAGGAAAGGTGAACGTGTGTTTCCTG
GCTGCCTACTTGCCATAGATATTTAAACCACCACCATTCACAGAAACATT
TTCCTTAAAAAATTATCTTGTTTCTAAGTATGCAAATGTTTAAGTAAATT
CTCTTTAAGGTGATAAATAGGGAAAAAATGTCTGCAAGGTCTTTAACTTG
TGAGATTTATCTTCAGAAAAAGAAGTAAAAGGTTAAGAGGGGGTCATTTT
TCTGTTTTTAACATCTGTTAGATTTGTCAGAAGTATTTGTGTTTCTCACC
ATTTTACAGCGTGTTTTCCACATGTTTCTTCTCTAGAATCACATCTTCTT
TCTCAAGAACAGTGCCCAGTGCTACATACACACTCACACACACCCTCTTT
TTCTTTTTCTCTCCCACATTTTTTCTGCTTCTCTCCTCTCTTTTTTTTAG
TTCCATACCAGACCTCTTTCGCAGCTGTATTTGCACTTTCCCTGACCTGA
TTTCTCGTTGTTCTCCCTTTCCCTCTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_h08.g1 MSMg01no492_h08.g1 CHROMAT_FILE:
MSMg01no492_h08.g1 PHD_FILE: MSMg01no492_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:41 2005
         (240 letters)



>mm_chr14_86706792_86707431
          Length = 640

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggggattaaggagaatgtaacccatccttacactcacagcattcaggatatagagtact 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cggggattaaggagaatgtaacccatccttacactcacagcagtcaggatatagagtact 260

                                                                       
Query: 61  gaggaaatgccttaccctaagaaagtggagttcatgtgatgtatagagggatgtgacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggaaatgccttaccctaagaaagtggagttcatgtgatgtatagagggatgtgacagc 320

                                                                       
Query: 121 atgagtccatacactccattgagcactcttcaggaaaggtgaacgtgtgtttcctggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagtccatacactccattgagcactcttcaggaaaggtgaacgtgtgtttcctggctg 380

                                                                      
Query: 181 cctacttgccatagatatttaaaccaccaccattcacagaaacattttccttaaaaaat 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctacttgccatagatatttaaaccaccaccattcacagaaacattttccttaaaaaat 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)