BAC Information

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BAC

Clone NameMSMg01-492H10
Chromosome14 (Build37)
Map Location 45,974,117 - 45,974,287
singlet/doubletsinglet
Overlap geneStyx
Upstream geneLOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6
Downstream geneGnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492H10.T7 (MSMg01no492_h10.b1)MSMg01-492H10.TJ (MSMg01no492_h10.g1)
ACCAG570213AG570214
length738803
length of high quality
(start - end)
191 (119 - 309)239 (67 - 305)
definitionCHROMAT_FILE: MSMg01no492_h10.b1 PHD_FILE: MSMg01no492_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:42 2005CHROMAT_FILE: MSMg01no492_h10.g1 PHD_FILE: MSMg01no492_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXNATGCGAGACGAGCCGCGGAA
TTCCAGGCTATCTAAAAAATATTTTGTCAAACACAAGCACACGCACACAC
ACACACACACACTCTCACACACACACACACACACACCCCTACCTACCTAC
CTACCTACCTATAGTAGATATCCCTGGTGACAGAAACCAGATTACAATTT
GCCTGGAGTTATGTTGGGTGGAATGCCTATAGACATTGGATACCTTTCTT
TTAGTTTCTTTTAATAAATTTAATTTTCTTTTGCTTTGTGTCTGGGTGTT
TTGTCTGCTTCTCTTCAATGTACCACTTGTGGGCCTGGTTTCTTCAGAGC
CAAAAGAGGGTGTCAGATCCTCTGGAACTGGAGCTACAGATGCTGGTAGG
CTGCCACGTTGGTGACAGAAGTCAACCAGGTACACTAGAAGAGCAACCAC
CTCTGAAACATCTTCTCCAGGCTCCATGGGATGCCCCTTTCAACTGATAA
AACACTCTTCTATCTTACCCTGCCCTGGTGACACATTGACCTTAATCGCC
TCATTTTGCAATCTCAAGCTGAAACATCCTCTGAATTCTACACTAACCTT
AGTCTAAAACGTGACTTCCCATGATATTCCGCATCTACTCCGTACCTTCC
TTGTTCCTGATCAATACAACCGATAATTCACACGCCTTCTTTTCCTTATC
TGTACCGCACCTTCATTTCCTCATATCAAAGACCCAAG
AATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTACAGCGAAATTCCTAACAGTATAAGCAGAGCTAAGGGTGGGGG
GGGATAAGCTGTCTGACTCTTTTGCCTGCTGGTGGGACCCTATTACTCCT
ACTGCATTGCCTTGTCAGCCTTGATGTGATGGTATGTGCCTGGTCTTACT
GTAGCTTGTTATGTGTTTGGTTAAAGTCCCTAGGAAGCCTGCTCTTGCTG
AGAGGAAGGGGAAGGGATGATCTGAGAGAGAGGGAAGGTAGAGGAGAGAG
TCTGTTGTAATTTTGAAGGATATTACACTACCGTTGTTATGCTCTATTTT
TTTCTCTAACACTCACTCCCTATTTCGTCCCTTTGCTCTCTTATTTCTTT
ACTCCTTTCACTAATCCCTCATTCTTTGTGTTTTATTCACCGCTGTTTTT
TCCCTCACTGTCTTCCCATTTATCTTTTTTTTATCTTTTTTCATCTCTTT
TTTCTATTCTCCCCACTTTTTTCCCTTCTTCTTCACTATAAAAATTATCT
CTTCCCTATCCTCCCTCTTTTCTCTACCCCTACTCCTCTTTTCTCTTTTA
CCCTCCCTCCTCCTCTGTTCTTCTACCTTTCTTTATATTTTCTTTCTTTC
TCCCCCCACTTTCCTTTCTTCTTTCTTCTTCGTTGCCCCTTCTTTCTTTC
TCCCTTCCTCCTTTACCCTTTTCTCTCCCCTTACCTCCTTCCACCTTCGC
CTTTTATCCTCTTCATTTCTCCATCATATCCTACCTTCTTCCCCCTCTTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_h10.b1 MSMg01no492_h10.b1 CHROMAT_FILE:
MSMg01no492_h10.b1 PHD_FILE: MSMg01no492_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:42 2005
         (191 letters)



>mm_chr14_45973874_45974464
          Length = 591

 Score =  331 bits (171), Expect = 2e-95
 Identities = 171/171 (100%)
 Strand = Plus / Minus

                                                                       
Query: 20  cctacctacctacctacctacctatagtagatatccctggtgacagaaaccagattacaa 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cctacctacctacctacctacctatagtagatatccctggtgacagaaaccagattacaa 355

                                                                       
Query: 80  tttgcctggagttatgttgggtggaatgcctatagacattggatacctttcttttagttt 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tttgcctggagttatgttgggtggaatgcctatagacattggatacctttcttttagttt 295

                                                              
Query: 140 cttttaataaatttaattttcttttgctttgtgtctgggtgttttgtctgc 190
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cttttaataaatttaattttcttttgctttgtgtctgggtgttttgtctgc 244


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)