Query= MSMg01no493_d16.b1 MSMg01no493_d16.b1 CHROMAT_FILE:
MSMg01no493_d16.b1 PHD_FILE: MSMg01no493_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:41 2005
(698 letters)
>mm_chr14_18729768_18730866
Length = 1099
Score = 1303 bits (674), Expect = 0.0
Identities = 689/696 (98%), Gaps = 5/696 (0%)
Strand = Plus / Minus
Query: 5 gaattcacctcag---attcacgaggcctagcaaaggaacgacttggatccatggtggag 61
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattcacctcagaaaa--cacgaggcctagcaaaggaacgacttggatccatggtggag 841
Query: 62 aagagctggagcccacaattgcagagtcagctgtagaagttgggagaccagggtcagaag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aagagctggagcccacaattgcagagtcagctgtagaagttgggagaccagggtcagaag 781
Query: 122 tctcatgggattctgaggtgggagatgaggccaggagctagggcggctgtggcaccttct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tctcatgggattctgaggtgggagatgaggccaggagctagggcggctgtggcaccttct 721
Query: 182 tccttcagaaaacaagcgggagctaatgctgggtacagagcaatcgaatggcgacatgtt 241
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tccttcagaaaacaagcaggagctaatgctgggtacagagcaatcgaatggcgacatgtt 661
Query: 242 aagtaaaaatttacctctattgcactagagaaaaggagggtctccagtgcatttccctgt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aagtaaaaatttacctctattgcactagagaaaaggagggtctccagtgcatttccctgt 601
Query: 302 taacaggaagggcaggtgaggaggacagggagacagagaagagatgggaataaccctatg 361
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 taacaggaagggcaggtgcggaggacagggagacagagaagagatgggaataaccctatg 541
Query: 362 aagaaaagaacaccaccacagagtaattaagtaatgctcttatttaataagaatattaag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aagaaaagaacaccaccacagagtaattaagtaatgctcttatttaataagaatattaag 481
Query: 422 tggattccttatttaataaaataagagtttaaagtcatattataaaataagataaaaaga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tggattccttatttaataaaataagagtttaaagtcatattataaaataagataaaaaga 421
Query: 482 actaaggaaaccccatgagacacagagaaactaaacaggtaaaggtgggggagcctaaac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 actaaggaaaccccatgagacacagagaaactaaacaggtaaaggtgggggagcctaaac 361
Query: 542 gtggaacagcctacatggggaacagcagaggttcaggctaggcatgtggagggagatgga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtggaacagcctacatggggaacagcagaggttcaggctaggcatgtggagggagatgga 301
Query: 602 gggctcgaagccaagatcactgatatttctcagatgggaaatatgacaggaaaggcagga 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gggctcgaagccaagatcactgatatttctcagatgggaaatatgacaggaaaggcagga 241
Query: 662 ggaggttctccattgctgtgttaaagacatcatgaa 697
||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggaggttctccattgctgtgttaaagacatcatgaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1099
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1089
Effective search space: 749232
Effective search space used: 749232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_d16.g1 MSMg01no493_d16.g1 CHROMAT_FILE:
MSMg01no493_d16.g1 PHD_FILE: MSMg01no493_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:41 2005
(604 letters)
>mm_chr14_18560680_18561683
Length = 1004
Score = 1065 bits (551), Expect = 0.0
Identities = 585/605 (96%), Gaps = 17/605 (2%)
Strand = Plus / Plus
Query: 1 agtccatattgaaaagtaccaaattctagagccaagatagtttttctgtaggacttttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccatattgaaaagtaccaaattctagagccaagatagtttttctgtaggacttttat 260
Query: 61 aatggaaatcaactctacctagactgctaagcctcgtaattgtggcccatttgagctgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggaaatcaactctacctagactgctaagcctcgtaattgtggcccatttgagctgct 320
Query: 121 acagttcaagtggaaatctgttcaggttgcagatttctggggtctcatagaataaattct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagttcaagtggaaatctgttcaggttgcagatttctggggtctcatagaataaattct 380
Query: 181 ttatgctgagagcagggcctgctaatccacattttaataaagcctgatttatgactaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgctgagagcagggcctgctaatccacattttaataaagcctgatttatgactaagc 440
Query: 241 ttcagaatttgaaaaagcgcattctattccttctgtagtggatggttttcttggaggttg 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ttcagaatttgaaaaagcgcattctattccttctgtactggatggttttcttggaggttg 500
Query: 301 gtgagcttgctaacccttgagctgggcatggtagcacttgggaggcagaggcaggcggat 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgagcttgctaacccttgagccgggcatggtagcacttgggaggcagaggcaggcggat 560
Query: 361 ttctgagttcgaggccagcctgatctacaaagtgagttccaggacagccagagctacaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgagttcgaggccagcctgatctacaaagtgagttccaggacagccagagctacaca 620
Query: 421 gagaaaccctttctcaagaaacaaaacaaaacaaacaaacaacaaacaacaaaaaaacaa 480
||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 gagtaaccctttctcaagaaacaaaacaaaacaaacaaacaacaaa--------aaacaa 672
Query: 481 aaaccaaaaaacaaacaaacaaacaaaaaaactgagtctagaaataaggatagtcccttg 540
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 673 aaa-------acaaacaaacaaa-aaaaaaactgagtctagaaataaggatagtcccttg 724
Query: 541 ggacccc-aactctactcgtggaaccaggtctttcatccacaggacagattccaagtcag 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ggacccccaactctactcgtggaaccaggtctttcatccacaggacagattccaagtcag 784
Query: 600 agtag 604
|||||
Sbjct: 785 agtag 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
