BAC Information

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BAC

Clone NameMSMg01-494D14
Chromosome14 (Build37)
Map Location 117,118,404 - 117,118,626
singlet/doubletsinglet
Overlap genenone
Upstream geneGpc5
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494D14.T7 (MSMg01no494_d14.b1)MSMg01-494D14.TJ (MSMg01no494_d14.g1)
ACCAG571555AG571556
length740730
length of high quality
(start - end)
617 (53 - 669)223 (84 - 306)
definitionCHROMAT_FILE: MSMg01no494_d14.b1 PHD_FILE: MSMg01no494_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:01 2005CHROMAT_FILE: MSMg01no494_d14.g1 PHD_FILE: MSMg01no494_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGTTT
ATACGTAAACATGATAAAAGCAATCTACAACAAACCAGTAGCCAACATCA
AAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGA
CAAGGCTGCCCACTTTCTCCCTACCTATTCAAAAGTACTTGAAGTCCTAG
CCAGAGCAATTCGACAACAAAAGGAGATCAAAGGGATACAAATTGGAAAA
GAAGTTAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGA
CCCTAAAAATTCCACAGAGAACTCCTAAACTTTATAAACAGCTTCGGTGA
AGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTCTCTCTACA
CAAAGAATAAGCAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCA
ATAGTTACAAATAATATAAAATACCTTGGCGTGACTCTAACTAAGAAGTG
AAATATCTGTATGATAAGAACTTCAAGGCTCTGAAGAAAGAAATTAAAGA
AGATCTCAGAAGATGGAAAGATCTCCCATGCAAATGGATTGGCAGGATCA
ACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCA
ATCCCCATCAAAATTCAAACACAATTCTTCAACGAATTAGAAAGAGCAAT
CTGCAAATTCATCTGGAATGACAAAAAACCTAGGATAGCN
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTT
TTCCGCGGAGAATCTGGGAATTTTAATATGAATATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACC
TATCACCTATCATCTATCTATTTTCACTATCATCATTTACCATATATTTG
TGATACGTCATCTATGTTTTGTCTGACTATAGTATTTCTATTTGTCTAAT
CTTAAAATAATAGGCTAACATTGAAATTGAAATAACCAAGTGGAAAATTT
TTCATATATTCAAACATTGACAACAGATATTTCAGCTACTTATTAAATTT
TTGTGAAGGCCACAAAAGTTCTAGGCAACCCCATATCTTTTATTTCAGAA
TGTATAATTAAACCAAACAGGCTTCCTGAGGTATATCTTATCTTGAGTCC
TTAAAGTACAGAGAGGTTAATTTCAGGTATGGATGTTTCTCAGATAGATA
ATTAAACATGATAAACTGAGTAAAATAAATAACTGTGGTCCCCATGAAAC
TCAAGATGATCTTATCAATTTAATTTATAAACAAGAGCTTTAAAAAGTTT
CAGAATCAGACAACTATATGAATATTTTACTTGTCAAGAGTCCTTGTCAA
GAGCCAACAAGCAAATTTGTCCTACATGTATCTGTGTATCTAAGAATAAC
CTCACGTATCATTTATCTATTTTTAGGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_d14.g1 MSMg01no494_d14.g1 CHROMAT_FILE:
MSMg01no494_d14.g1 PHD_FILE: MSMg01no494_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:01 2005
         (223 letters)



>mm_chr14_117118116_117118738
          Length = 623

 Score =  385 bits (199), Expect = e-111
 Identities = 217/223 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctatctatctatctatctatctatctatctatctatctatctatctatctatctatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 511 atctatctatctatctatctatctatctatctatctatctatctatctatctacctacct 452

                                                                       
Query: 61  atctacctatcacctatcatctatctattttcactatcatcatttaccatatatttgtga 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 acctacctatcacctatcatctatctattttcactatcatcatttaccatatatttgtga 392

                                                                       
Query: 121 tacgtcatctatgttttgtctgactatagtatttctatttgtctaatcttaaaataatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tacgtcatctatgttttgtctgactatagtatttctatttgtctaatcttaaaataatag 332

                                                      
Query: 181 gctaacattgaaattgaaataaccaagtggaaaatttttcata 223
           | ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 331 gttaacattgaaattgacataaccaagtggaaaaattttcata 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)