BAC Information

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BAC

Clone NameMSMg01-495N11
Chromosome14 (Build37)
Map Location 92,779,079 - 92,779,316
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495N11.T7 (MSMg01no495_n11.b1)MSMg01-495N11.TJ (MSMg01no495_n11.g1)
ACCAG572789AG572790
length703720
length of high quality
(start - end)
308 (328 - 635)240 (79 - 318)
definitionCHROMAT_FILE: MSMg01no495_n11.b1 PHD_FILE: MSMg01no495_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:59 2005CHROMAT_FILE: MSMg01no495_n11.g1 PHD_FILE: MSMg01no495_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCGATTATTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXTCATACAG
AAGAGCGCGGAATTCCTGATTTTCCAAAACTATGATCATGAATGGGTGTT
GGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCAAGTGGTTT
TTGTCTTTGAGTTTGTTTATATAGTGGATTACCTTGATGGATTTTCGTAT
ATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGA
TGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGG
ATTTTTGCATCGATATTCTTTATTATTTTGGTCTGAAGTTCTCTATCTTT
GTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAA
TGAGTTGGGTAGAGTACTTTATACTTCTATCTTGTGAAAAAGTTTGTGCA
GAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAAC
CCGTCTGATCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAACTGCTTC
TATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGAT
TCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCTATTTTGTCCAGG
TTTTCCAGTTTTGTTGAGTATAGCCTTTTGTATAATGATCTGATGGTGTT
TTG
NCCCCACGATGATATGNGAGGCCTGGNGGNCGCCTGTTTCAAACATGGGG
NGAACTATAGAAGTACCAAAAAAAGGGTAAAAGAGGTATAACATTTATAT
GTAGTCTTAGTTTCTTTATCATTATTATTTTTAAAAATATACTATAACCC
AAATAAAATATTTTCCAGTTAATTTCATATATATTTTAAACTAATATATA
TGACACAATCTCTAAAATATGACATTTAAATATTTATTTGCTGCACATTT
TTATTTTGTTTACATTGAAGAAATTTATATAAATATTGTCAGCATGTTAT
TTCTGAGAGATCTACATCNGTTGTTAGAGAGTACTTCTTAATTATGCTTG
AGAAAATTTATGAAGTAGCATATATAATTATATATGCATAAATTAGCATT
TAATAGTAGCAATGGGTTACCTACATTTAGATATATAAAAAATTCAATTT
AAGTCTTCAAATATATCTTATTTGTCTTAGGATATGAATTATAACATTAA
ACCAAGACAGAACCTAGAAAGAATATTCTGAAACAAAATATGGGAGAATG
GGGGGGGAGGTACAAAGAAAGAGCACACCAAATGAATGAAATTTCAATTA
ATAGATTCATTGTACTTTAGTTATAAATGATGTGTCTTAGCTAAGGTTTT
ACTGCTGTGAAAAGACACCATTACAAGAGCAAGTATTATGAGGACAACAT
TAAATTATGGCTGGCTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_n11.g1 MSMg01no495_n11.g1 CHROMAT_FILE:
MSMg01no495_n11.g1 PHD_FILE: MSMg01no495_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:59 2005
         (240 letters)



>mm_chr14_92778816_92779455
          Length = 640

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagaggtataacatttatatgtagtcttagtttctttatcattattatttttaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagaggtataacatttatatgtagtcttagtttctttatcattattatttttaaaaat 442

                                                                       
Query: 61  atactataacccaaataaaatattttccagttaatttcatatatattttaaactaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactataacccaaataaaatattttccagttaatttcatatatattttaaactaatata 382

                                                                       
Query: 121 tatgacacaatctctaaaatatgacatttaaatatttatttgctgcacatttttattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||
Sbjct: 381 tatgacacaatctctaaaatatgacatttaaatatttatttgctgcacatttaaactttg 322

                                                                     
Query: 181 tttacattgaagaaatttatataaatattgtcagcatgttatttctgagagatctaca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttacattgaagaaatttatataaatattgtcagcatgttatttctgagagatctaca 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)