BAC Information

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BAC

Clone NameMSMg01-497A12
Chromosome14 (Build37)
Map Location 65,806,029 - 65,806,369
singlet/doubletsinglet
Overlap genenone
Upstream geneMsra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3
Downstream geneFzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497A12.T7 (MSMg01no497_a12.b1)MSMg01-497A12.TJ (MSMg01no497_a12.g1)
ACCAG573696AG573697
length748757
length of high quality
(start - end)
661 (79 - 739)586 (84 - 669)
definitionCHROMAT_FILE: MSMg01no497_a12.b1 PHD_FILE: MSMg01no497_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:34 2005CHROMAT_FILE: MSMg01no497_a12.g1 PHD_FILE: MSMg01no497_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNATATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATAGAA
TCCGCGGAATTCTTACCTTTCCTCACCTGTGCTGCCTCATGTGCCTGCGC
TGCAGTCAGGTCCCCAGCACACAGCATCATGTTCTGCAGTGCCCGTGCAC
ACTGCCTGTATCACCTCCACCCCAGACGGCTGCACGTCATGAACTGCAAT
CCTTTGACTATACATATAGGATTTTTCATTCTTATGAAAACATAATGGTT
AAATTACAGAGAACAAAGACTTAATATTTTCCTGCCACACTTAGGGACAA
TTATGAGATTCGTACATTAGTGAATTTAGTAAATCTGGGTGTATCTTTAG
ATTGTATTTTGTTAGAATATTTGATTTTAAAAATTGCTATTTCCAGCCAT
ACAGTGGTGACACATACCGTTAGTCCCAGCACTTAGGAGGCAGAGACAGG
CAGATCTCTGTGAGTTCAAAACCAGCCTGGTCTACAGAGAGAATTCTAGG
AAGTCAGGGCTGTTACACAGAGAAACAAGTAGAGTGGCTCAGAGGATAAA
GGTACTTGCTACCAAAGCTGATGACCTGGGTTTGATCTCAAGGGCCCGCC
TGGTGGAAAGAAAGAGCCCACTCCTGAAAGTTACACTTTGACCACATGAA
TGCCATGATGCATATGCAACCCCCTGGCATGCACACACACACAGAATAAA
CACAGTTACAATTTTACATTGCTGTTTGAGTTCCTGGCTTAAGTTTCA
NNNNTTCCAATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACTGCAGAGCAGCAC
CAACTCTGGCCAACACACGTATACACACACACACACACACACACACACAC
ACACACACACACACACTCAAAGGTGCCCGGTCCATAGTCCCAGGTCCTGT
AAACAGTCCACCTCATCTGGCAGACACACTATTCTGATTTGCTTGTCTGC
TGCCGTGGTGAATGCCATAACCAAATGGCTTGAGGAAGAAAGAGTGTATC
TCTGCTTGCAGGTTGCAGTGTCACTGATGGAAGTCAGGGCAGGAATTTGA
CACACAAACCATGGACGAGTGCTGCTTACTATCTAGCTTGCTCCCAGGCT
CACATTCAGCAACCTTTTTTTAAGCAGCCTAGGCCCTGCCTCAGGATAAA
ACCACCCAAAGGGCTGGGTCCTCATACGTCACTTAGCAATAAAAACAAAT
GCCCTACAGACACGTCCATAGCAATTCCTCCGTTGAGGTGTCTCCTTCCC
AGGTCTGTCACATTGGAAATCAAGATTAACCTGCACGGGGTCTTTGTAAA
TATGACTGGAGAGACTGTCCTGGGTTATCAGTGGGATCCCAGTCTAGTTA
ACATGATTTGGAAAAAAATCGCAGAATGTTCTTGGTCTGTATTGTAAAGG
GTGAGAAAGATGCCATATGGTAAGGGCTTACTCTGCTGTCTCTGACTTTA
AAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_a12.g1 MSMg01no497_a12.g1 CHROMAT_FILE:
MSMg01no497_a12.g1 PHD_FILE: MSMg01no497_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:34 2005
         (586 letters)



>mm_chr14_65805387_65806372
          Length = 986

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 246 ggaagtcagggcaggaatttgacacacaaaccatggacgagtgctgcttactatctagct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 ggaagtcagggcaggaatttgacacacaaaccatggacgagtgctgcttactatctagct 924

                                                                       
Query: 306 tgctcccaggctcacattcagcaacctttttttaagcagcctaggccctgcctcaggata 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tgctcccaggctcacattcagcaacctttttttaagcagcctaggccctgcctcaggata 864

                                                                       
Query: 366 aaaccacccaaagggctgggtcctcatacgtcacttagcaataaaaacaaatgccctaca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aaaccacccaaagggctgggtcctcatacgtcacttagcaataaaaacaaatgccctaca 804

                                                                       
Query: 426 gacacgtccatagcaattcctccgttgaggtgtctccttcccaggtctgtcacattggaa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gacacgtccatagcaattcctccgttgaggtgtctccttcccaggtctgtcacattggaa 744

                                                                       
Query: 486 atcaagattaacctgcacggggtctttgtaaatatgactggagagactgtcctgggttat 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atcaagattaacctgcacggggtctttgtaaatatgactggagagactgtcctgggttat 684

                                                    
Query: 546 cagtgggatcccagtctagttaacatgatttggaaaaaaat 586
           |||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 683 cagtgggatcccagtctagttaacatgaattggaaacaaat 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)