BAC Information

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BAC

Clone NameMSMg01-497G16
Chromosome14 (Build37)
Map Location 47,022,150 - 47,149,557
singlet/doubletdoublet
Overlap genenone
Upstream genePlekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732
Downstream geneLOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497G16.T7 (MSMg01no497_g16.b1)MSMg01-497G16.TJ (MSMg01no497_g16.g1)
ACCAG573990AG573991
length770769
length of high quality
(start - end)		572 (49 - 620)327 (325 - 651)
definitionCHROMAT_FILE: MSMg01no497_g16.b1 PHD_FILE: MSMg01no497_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:06 2005CHROMAT_FILE: MSMg01no497_g16.g1 PHD_FILE: MSMg01no497_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,022,150 - 47,022,717)(47,149,231 - 47,149,557)
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
GCGGAATTCACTCACTTACGAGCACACAGGCCTTGAACCTACTCGCCTCC
TAACACCACTCCCTTGGGAGTCAAGCTTCCAGTACTTGACCTGTAGGAAT
ACATTCCAGCTGGAGTTCTGTTCCATGTGACTGTAGTTTTAGATACTCAT
TTCTTCATGGGTTCCATGGGCTAAATGAGTCCTGAACTTCAAGAGTTGGC
AACCTTTCACTAGAAAGGGTTAGGTACTGAATGTTCAAGCCAGTGGTTCT
CAATCTTCCTAATGTTGCGACCCTTTAATACAGTTGAGGTGACCCTCAAC
CATAAAATTACTTTTATCGCTACTTCGTAAGTTTGCTATTGGTATGAATT
GTAATTAAATATCTGGGTTTTCTAATGGTCTCAGGCGATCCCTGTGAAAG
GGTCACTTGTCCTCTAAGGGTCACGTGACCCACAGGTTGAAAACCACTGG
TTTATGCTCTGAGAGGCACATACCGTCTTCCTCATTGTTTCTTCCTCTTT
CCTCCATTGTTTCCTTCCTCTACAGCTGCTTCCAGATACATAGATAGACT
ATTTGTATTTGTTTTCTAAGGTTACCATGACAAAGTACCACCAAGGATGG
CTTAAATAATCCAGATCTGTTGTGTCTGTTGGGAAGCTATGAGTCTGAGA
ACTCGCATGTAGTTGTCTGTAGTGGGGACTATGAATGGCTGCCTTGCTCC
TGGACACACTTGGTTTATGG

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTACAGGGAAATCTCCCAAAGTG
TCGTGGAATTTCATATATATATATATGTATATATATATATGTATATATAT
ATATACATATATATATACATACACACACACACACACACATATTTGTAGAA
GTTTTAAACAGTAAGCATCTTTTGTCTACCTTGTAATGCTCCTTCTAGCT
TCAGGAAGCTCATCTTTAGCATTTAGTCCATACATTTTAATAAACAGTTA
TTGAATAACCAAAACTATTTTTAGAACAGCTGCCATTATTAAAGTTCAAT
CATTAGGCATGCAAGCAACTAACAGTTCATTTTGGAGAAACACTTTATCA
GTGTGTTGTAAAAAGAGACCAAATGTAATCTGATCCTAGAAAAATGCACA
GAATTCCATTCTTTCCTGACTTGGGCAACTAAAGCAGATGCAGAGTTGAT
ATAGGGACAAGCAGGCCCGATGCTTAAATGTGTGAGCCACTAAAAACAGC
CACCACATTCCTGGATTGTTGTACTCCTTGGCTAGGGATCCAGCATTCCT
AAACCCCCAGAACACATCCCCACCATCAGCCAGAAGCCAGAGCGTCTCTG
CAACCCTGGTATCATGTCATGTTGAATATTTGAAACAGGGAATGATTGCC
CATTTATCTTCCTCTATCTTTTTGGATGATTGTCATGGGGCAGAAAGTAN
GCAGCCCCACTTTAGCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_g16.b1 MSMg01no497_g16.b1 CHROMAT_FILE:
MSMg01no497_g16.b1 PHD_FILE: MSMg01no497_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:06 2005
         (572 letters)



>mm_chr14_47021946_47022917
          Length = 972

 Score = 1083 bits (560), Expect = 0.0
 Identities = 566/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcactcacttacgagcacacaggccttgaacctactcgcctcctaacaccactcc 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcactcactcatgagcacacaggccttgaacctactcgcctcctaacaccactcc 264

                                                                       
Query: 65  cttgggagtcaagcttccagtacttgacctgtaggaatacattccagctggagttctgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgggagtcaagcttccagtacttgacctgtaggaatacattccagctggagttctgtt 324

                                                                       
Query: 125 ccatgtgactgtagttttagatactcatttcttcatgggttccatgggctaaatgagtcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccatgtgactgtagttttagatactcatttcttcatgggttccatgggctaaatgagtcc 384

                                                                       
Query: 185 tgaacttcaagagttggcaacctttcactagaaagggttaggtactgaatgttcaagcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaacttcaagagttggcaacctttcactagaaagggttaggtactgaatgttcaagcca 444

                                                                       
Query: 245 gtggttctcaatcttcctaatgttgcgaccctttaatacagttgaggtgaccctcaacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtggttctcaatcttcctaatgttgcgaccctttaatacagttgaggtgaccctcaacca 504

                                                                       
Query: 305 taaaattacttttatcgctacttcgtaagtttgctattggtatgaattgtaattaaatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaaattacttttatcgctacttcgtaagtttgctattggtatgaattgtaattaaatat 564

                                                                       
Query: 365 ctgggttttctaatggtctcaggcgatccctgtgaaagggtcacttgtcctctaagggtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgggttttctaatggtctcaggcgatccctgtgaaagggtcacttgtcctctaagggtc 624

                                                                       
Query: 425 acgtgacccacaggttgaaaaccactggtttatgctctgagaggcacataccgtcttcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acgtgacccacaggttgaaaaccactggtttatgctctgagaggcacataccgtcttcct 684

                                                                       
Query: 485 cattgtttcttcctctttcctccattgtttccttcctctacagctgcttccagatacata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cattgtttcttcctctttcctccattgtttccttcctctacagctgcttccagatacata 744

                                       
Query: 545 gatagactatttgtatttgttttctaag 572
           ||||||||||||||||||||||||||||
Sbjct: 745 gatagactatttgtatttgttttctaag 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_g16.g1 MSMg01no497_g16.g1 CHROMAT_FILE:
MSMg01no497_g16.g1 PHD_FILE: MSMg01no497_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:06 2005
         (327 letters)



>mm_chr14_47149031_47149757
          Length = 727

 Score =  632 bits (327), Expect = 0.0
 Identities = 327/327 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagctgccattattaaagttcaatcattaggcatgcaagcaactaacagttcattttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aacagctgccattattaaagttcaatcattaggcatgcaagcaactaacagttcattttg 468

                                                                       
Query: 61  gagaaacactttatcagtgtgttgtaaaaagagaccaaatgtaatctgatcctagaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gagaaacactttatcagtgtgttgtaaaaagagaccaaatgtaatctgatcctagaaaaa 408

                                                                       
Query: 121 tgcacagaattccattctttcctgacttgggcaactaaagcagatgcagagttgatatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgcacagaattccattctttcctgacttgggcaactaaagcagatgcagagttgatatag 348

                                                                       
Query: 181 ggacaagcaggcccgatgcttaaatgtgtgagccactaaaaacagccaccacattcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggacaagcaggcccgatgcttaaatgtgtgagccactaaaaacagccaccacattcctgg 288

                                                                       
Query: 241 attgttgtactccttggctagggatccagcattcctaaacccccagaacacatccccacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 attgttgtactccttggctagggatccagcattcctaaacccccagaacacatccccacc 228

                                      
Query: 301 atcagccagaagccagagcgtctctgc 327
           |||||||||||||||||||||||||||
Sbjct: 227 atcagccagaagccagagcgtctctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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