Query= MSMg01no498_j04.b1 MSMg01no498_j04.b1 CHROMAT_FILE:
MSMg01no498_j04.b1 PHD_FILE: MSMg01no498_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:40 2005
(615 letters)
>mm_chr14_120511169_120512183
Length = 1015
Score = 1100 bits (569), Expect = 0.0
Identities = 599/609 (98%), Gaps = 1/609 (0%)
Strand = Plus / Plus
Query: 8 gaattctggatctctgacgttacacatcttctcattctgtcttctgtaactgttttctct 67
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 208 gaattctggatctctgaagttacacatcttctcattctgtcttctgtaactattttctct 267
Query: 68 cctatatcagccatagtttgggtcccttctgttgtattctactctatataacatattcta 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cctatatcagccatagtttgggtcccttctgttgtattctactctatataacatattcta 327
Query: 128 atttatcttccaggaattctctttcaccctgtgccaaattcgttcctaaagccagctttt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atttatcttccaggaattctctttcaccctgtgccaaattcgttcctaaagccagctttt 387
Query: 188 caaacatgttcgtatcgtttccatttctgaaactcttacctgcattgggtcttcactggc 247
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 388 caaaaatgttcgtatcgtttccatttctgaaactcttacctgcattgggtcttcactgac 447
Query: 248 ttcatctgcgtctgcggatagttgagctgaggcagcactgcctcctagctcgccccacag 307
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttcatctgcgtctgcagatagttgagctgaggcagcactgcctcctagctcgccccacag 507
Query: 308 tccccctctgcacgtcaacaacaggttcgaagccacaaactctcagaatggaaatgtctc 367
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tccccctcttcacgtcaacaacaggttcgaagccacaaactctcagaatggaaatgtctc 567
Query: 368 agtccttccttagcttctgaaggatcgtcctttttttttt-aattagatattttctttat 426
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 568 agtccttccttagcttctgaaggatcatcctttttttttttaattagatattttctttat 627
Query: 427 ttacatttcaaatgttctccccttttctggtttcccctctgaaaacccccatggtcacca 486
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttacatttcaaatattctccccttttctggtttcccctctgaaaacccccatggtcacca 687
Query: 487 acccacccactcccactttcttgccctggcattcccctatactggagcatagaaccttca 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acccacccactcccactttcttgccctggcattcccctatactggagcatagaaccttca 747
Query: 547 caggaccaagagccactcctcctattgatgtccacctaggccatcctctgctacatttgc 606
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 748 caggaccaagagccactcctcctattgatgaccacctaggccatcctctgctacatttgc 807
Query: 607 agctagaga 615
|||||||||
Sbjct: 808 agctagaga 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_j04.g1 MSMg01no498_j04.g1 CHROMAT_FILE:
MSMg01no498_j04.g1 PHD_FILE: MSMg01no498_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:40 2005
(430 letters)
>mm_chr14_120543044_120543873
Length = 830
Score = 801 bits (414), Expect = 0.0
Identities = 425/430 (98%), Gaps = 3/430 (0%)
Strand = Plus / Minus
Query: 1 ccctaaactggtagagctcagagctctgggagtatgctgggaaagggggtggtgacatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctaaactggtagagctcagagctctgggagtatgctgggaaagggggtggtgacatag 562
Query: 61 tctcttgcctatcaacctcgttctgttcttacatgcattacttaaactagacaagcatca 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcttgcctatcaacctggttctgttcttacatgcattacttaaactagacaagcatca 502
Query: 121 agacctttagctaagaagagagactggcttaaaggattggaacacctgggggattagctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacctttagctaagaagagagactggcttaaaggattggaacacctgggggattagctg 442
Query: 181 tttgatggaaacaagacaaagaaatgatcgagataatggttggcagtcctattcctccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgatggaaacaagacaaagaaatgatcgagataatggttggcagtcctattcctccag 382
Query: 241 aggggtctctttgcttgtgtgcaagaggcggtttgtaccagctcataggcaccaagtagc 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggggtctctttgctcgtgtgcaagaggcggtttgtaccagctcataggcaccaagtagc 322
Query: 301 atttcttcttaatttcccctctcagtaacttcacaggatgttggaactggccaggatagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcttcttaatttcccctctcagtaacttcacaggatgttggaactggccaggatagg 262
Query: 361 agtgtttacactgacaaatttggcagatgtcacaaagaagagtgtttcttcttttttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 agtgtttacactgacaaatttggcagatgtcacaaagaagagtgtttcttc---tttttt 205
Query: 421 ttttcccacc 430
||||||||||
Sbjct: 204 ttttcccacc 195
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
