BAC Information

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BAC

Clone NameMSMg01-498J17
Chromosome14 (Build37)
Map Location 90,053,486 - 90,054,051
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG328451, LOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498J17.T7 (MSMg01no498_j17.b1)MSMg01-498J17.TJ (MSMg01no498_j17.g1)
ACCAG574889AG574890
length775765
length of high quality
(start - end)
609 (47 - 655)566 (73 - 638)
definitionCHROMAT_FILE: MSMg01no498_j17.b1 PHD_FILE: MSMg01no498_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:43 2005CHROMAT_FILE: MSMg01no498_j17.g1 PHD_FILE: MSMg01no498_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTGCTCTGACCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCTCATTTGTCAATACTTGATCTTACAACACAAGCCATTGCCGTTC
TGTTCAGGAATTTTCCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTTTCCTCTATAAGTTTCATTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAAATAAGTATGGATCGATTCCCA
TTCTTCTACATGATAACAACCAGTTGTGGCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTTGGTCTTCGATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGTAAAGCTTTATGTCAGGCATGGTGATTCCACCACAGGTACTTTT
ATCCTTGAGAAAAGTTTTGCTATTCTAGGTTTTTTGTTTTCCCGATGAAT
TGCAAATTGCCCCTTCAAATTCTTG
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATGTGAATTGATTGCTTTCTCTTTTAT
GAAATTCAGTTTCTCAGGTCCTAAGAGAATATTTCATATTTGTTTCTAGG
AAAAGAAGCTTTAAAAGCCAATATTCATCTACTTTGATCATCTTCAATAG
CGTGAGATAATAGTTAAACATATATTAAAAGATAATATTTGAGTTGAGAA
TTCCTTGGAAATATATAACAGTTTAATTTCAAGATTATATTAATTTATCT
CATTTCAACTCTTTAGTATATATCCTACACATATAAGATACATGCATCAT
AATTAATGATAATTGTAACCCAAAAATCATAGCTGAGGTATAGAAAAAAG
TTCTAATTTTTACAGAATTTAAATATGTAAGAAGTAAGTCTTTATGAAAA
AAAAGAAAATTTGTTTCTGTTATTATAGTCTAAACCACAATGTTATCTCA
AAAACAGATCTTTTAAAAAGTCATGAATATGGGAAGGTTAATTAGGGGGA
GAATGGAGGAAATAAAAATGACAGGGAAATTATGGAGTGTAGAAAATTAT
AATAACCAAAATGCACTTTCAATCTATTCCCCTTACAATGTGTATGAGGG
AGCTTCATTGTAAATCTTTCATTAAAGGGAGATGCAGGTGGGAAAGAGCA
CCAAACAACAGTATCATAAAAATCTTTCATTAATGGAACATCTGGGCATT
CGTTAATAAATTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_j17.g1 MSMg01no498_j17.g1 CHROMAT_FILE:
MSMg01no498_j17.g1 PHD_FILE: MSMg01no498_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:43 2005
         (566 letters)



>mm_chr14_90053286_90054251
          Length = 966

 Score = 1094 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtgaattgattgctttctcttttatgaaattcagtttctcaggtcctaagagaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aatgtgaattgattgctttctcttttatgaaattcagtttctcaggtcctaagagaatat 707

                                                                       
Query: 61  ttcatatttgtttctaggaaaagaagctttaaaagccaatattcatctactttgatcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttcatatttgtttctaggaaaagaagctttaaaagccaatattcatctactttgatcatc 647

                                                                       
Query: 121 ttcaatagcgtgagataatagttaaacatatattaaaagataatatttgagttgagaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttcaatagcgtgagataatagttaaacatatattaaaagataatatttgagttgagaatt 587

                                                                       
Query: 181 ccttggaaatatataacagtttaatttcaagattatattaatttatctcatttcaactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ccttggaaatatataacagtttaatttcaagattatattaatttatctcatttcaactct 527

                                                                       
Query: 241 ttagtatatatcctacacatataagatacatgcatcataattaatgataattgtaaccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttagtatatatcctacacatataagatacatgcatcataattaatgataattgtaaccca 467

                                                                       
Query: 301 aaaatcatagctgaggtatagaaaaaagttctaatttttacagaatttaaatatgtaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaaatcatagctgaggtatagaaaaaagttctaatttttacagaatttaaatatgtaaga 407

                                                                       
Query: 361 agtaagtctttatgaaaaaaaagaaaatttgtttctgttattatagtctaaaccacaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agtaagtctttatgaaaaaaaagaaaatttgtttctgttattatagtctaaaccacaatg 347

                                                                       
Query: 421 ttatctcaaaaacagatcttttaaaaagtcatgaatatgggaaggttaattagggggaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttatctcaaaaacagatcttttaaaaagtcatgaatatgggaaggttaattagggggaga 287

                                                                       
Query: 481 atggaggaaataaaaatgacagggaaattatggagtgtagaaaattataataaccaaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atggaggaaataaaaatgacagggaaattatggagtgtagaaaattataataaccaaaat 227

                                     
Query: 541 gcactttcaatctattccccttacaa 566
           ||||||||||||||||||||||||||
Sbjct: 226 gcactttcaatctattccccttacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)