Query= MSMg01no500_f14.b1 MSMg01no500_f14.b1 CHROMAT_FILE:
MSMg01no500_f14.b1 PHD_FILE: MSMg01no500_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:58 2005
(332 letters)
>mm_chr14_13715929_13716660
Length = 732
Score = 588 bits (304), Expect = e-172
Identities = 325/332 (97%)
Strand = Plus / Minus
Query: 1 ctaatgcaaagaaaaggtccttttatgtaatacttcatagtttaataattctttgacaga 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctaatgcaaagaaaatgtccttttatgtaatacttcatagtttaataattctttgacaga 473
Query: 61 cagcatccatatcgactgctaattatctcccccataaggcatggtattatatttcccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cagcatccatatcgactgctaattatctcccccataaggcatggtattatatttcccaga 413
Query: 121 tgttttacaggtaggaaaacttttggaaatatataatattttgacctttgaagataaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgttttacaggtaggaaaacttttggaaatatataatattttgacctttgaagataaaag 353
Query: 181 atttgtagtgaaactaaccctttttattgctaaggtgtcactcaaaataaaataatacct 240
||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 352 atttgtagtaaaactagccctttttattgctaaggtgtcattcaaaataaaataatacct 293
Query: 241 ttcgacacattgtggcaattcacttgccattaagcaaatcttaccctgcaattagaagga 300
|||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 292 ttcgacacattgtggcaattcacttgccgttacgcgaatcttaccctgcaattagaagga 233
Query: 301 gaaatatggatctcctcatcaaactcaatgtc 332
||||||||||||||||||||||||||||||||
Sbjct: 232 gaaatatggatctcctcatcaaactcaatgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space: 233529
Effective search space used: 233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_f14.g1 MSMg01no500_f14.g1 CHROMAT_FILE:
MSMg01no500_f14.g1 PHD_FILE: MSMg01no500_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:58 2005
(365 letters)
>mm_chr14_13533814_13534577
Length = 764
Score = 671 bits (347), Expect = 0.0
Identities = 359/363 (98%), Gaps = 1/363 (0%)
Strand = Plus / Plus
Query: 1 agtattagagatgtaaaggcatctatagattgtctctatccagctcttccagatttatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtattagagatgtaaaggcatctatagattgtctctatccagctcttccagatttatct 260
Query: 61 gcaaacactgtagaaatttacagatgacaaatgtcatttcctgatagtgggaacatgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaacactgtagaaatttacagatgacaaatgtcatttcctgatagtgggaacatgaat 320
Query: 121 gttattgtcactgcccatcgagcacaggccaaaggcatgctgcctctgaaggctctgctt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gttattgtcactgcccatcgagcacaggtcaaaggcatgctgcctctgaaggctctgctt 380
Query: 181 gttaacctatgtgtggcatttttcaaatatcagaattaaagccaaaggaaacatctttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaacctatgtgtggcatttttcaaatatcagaattaaagccaaaggaaacatctttcc 440
Query: 241 tcatctcatgtctcttcaactttagctggcttatattctttctaacacataactccatgg 300
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tcatc-catgtctcttcaactttagctggcttaaattctttctaacacataactccatgg 499
Query: 301 tggttttcttttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggttttcttttggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 559
Query: 361 tgt 363
|||
Sbjct: 560 tgt 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 764
Length adjustment: 9
Effective length of query: 356
Effective length of database: 755
Effective search space: 268780
Effective search space used: 268780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
