BAC Information

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BAC

Clone NameMSMg01-500I03
Chromosome14 (Build37)
Map Location 7,490,922 - 7,491,527
singlet/doubletsinglet
Overlap geneLOC100042077
Upstream geneLOC100041421, LOC100041817, LOC100041431, LOC100041438, LOC100041442, LOC100041848, LOC100041456, LOC100041758, LOC100041470, LOC100041804, LOC100041487, LOC100041747, LOC100041507, LOC100041836, LOC100041728, LOC100041774, LOC100041530, LOC100041540, LOC100041840, EG666844, LOC666851, LOC100041569, LOC100041970, LOC100042000, EG666874, B930046C15Rik, LOC100041600, LOC100041958, LOC100041964, LOC546590, LOC666906, LOC100042024, LOC100041664
Downstream geneLOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500I03.T7 (MSMg01no500_i03.b1)MSMg01-500I03.TJ (MSMg01no500_i03.g1)
ACCAG576331AG576332
length627680
length of high quality
(start - end)
596 (28 - 623)605 (76 - 680)
definitionCHROMAT_FILE: MSMg01no500_i03.b1 PHD_FILE: MSMg01no500_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:09 2005CHROMAT_FILE: MSMg01no500_i03.g1 PHD_FILE: MSMg01no500_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:09 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCTATACGACTCACTATATTCAGAGGATCCGCGGAATTGTGAAGTTCACT
GGAAGGTCAGGTGGCTCACTGTGTCTTCTAAGCATTCCAGGTTGTTTTCC
TCATTGCCTGCCACCATTACATTTCCTGCTACCTCTGCTCAGTAAAGCTT
TGCCTTGTAGTTTGTCTTGGATTTTACTCATTGAGAGATTGAGTTGCTTG
GAGCTGAACTTGCATCCAGCAGAATTCCCAAAAGCTGTGGAGCAAACCAG
GCCTGTTACAGGAGCCCATTGAGGGTCTTGATAATCTAAAGTACTCATAC
TATCTTATCTGTGTAGCATTCAGCGGGACTGTTCTTCAACATCATTTTCT
CAGAGTTAAAATCAGCCTCAGTGGGGGTTGGGAGAAATGAGGACCTTCAG
ACAGTTCTGGTAGTATAAAATTGGTTATGTTTTTTAGAAGCCATGTTCAG
AAAGCAGAAGCTATCCTGATGTCCATCTGGTGAAGAATTAAAAGGTCCTA
ATGGTGCAGCCCTTCCATGAACTCAGTGTGAGATAATCCATGCAAACTTT
TGTCCTTCAACTAGTGAGCCCTATCTTACTCAAAATAGCCCTGACACAAT
CACATTCTGGGGAGAAAATGGTTTCTT
GCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTATATGCCCTGGCCTGCACGTACT
ACTCTGATGACTCATAATCATGTTGTTGATGTTTGAATGGGGCAATCACG
TGTAATTACGCCAATTCTTCCTAGCCCCTAACCCCTACCCTATAAAAACC
CTGACTTTTTGAGTCTCAGGGTCGATTCCTCTGTCTCCTGAGTGAGATAC
GTATTGACCTGGAGCCCCACCATCAAAGCTGCCTCATGCTTTTGCAACAA
GGTCTCTCATGTTTTTTTGGGTGACCCTGCATCCTGAGACTTGAGTGGGG
GCTCCTTCTTGGGGGCGCATCTTACATTTGCGGGCTCATCCGGGATTTGA
GGGGTCCCCAAGGTCTTGAAATACCACTTGGAGTTACGTTTTGTATGTGT
GTGGTATGTTTGTGCGGCCACTGAGTCTGTGCCTTGTTTTTCGGAGTCTG
GTGTTCTGGCAGCTGCCATTGAGGACTGTAAGGACCCACAGGCTGCGGTG
GGGGATGCCCTAAGGCCTGTAGGCTGCACCCCTGGAAGATGTTCCAAGGG
AGACCCTGGAGGGAGTGCCCAGGGTAAGGAACAGTCAGGAGGACCTGGCT
GTTGCCTGGCAGAGTAAAGGAGAGAGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_i03.g1 MSMg01no500_i03.g1 CHROMAT_FILE:
MSMg01no500_i03.g1 PHD_FILE: MSMg01no500_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:09 2005
         (605 letters)



>mm_chr14_7490723_7491727
          Length = 1005

 Score = 1056 bits (546), Expect = 0.0
 Identities = 591/606 (97%), Gaps = 1/606 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatatgccctggcctgcacgtactactctgatgactcataatcatgttgttgatgtttg 60
           ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 200 ttatatgccgtggcctgcatgtactactctgctgactcataatcatgttgttgatgtttg 259

                                                                       
Query: 61  aatggggcaatcacgtgtaattacgccaattcttcctagcccctaacccctaccctataa 120
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 260 aatggggcaatcacgtgtaatcgcgccaattcttcctagcccctaacccctaccctataa 319

                                                                       
Query: 121 aaaccctgactttttgagtctcagggtcgattcctctgtctcctgagtgagatacgtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaccctgactttttgagtctcagggtcgattcctctgtctcctgagtgagatacgtatt 379

                                                                       
Query: 181 gacctggagccccaccatcaaagctgcctcatgcttttgcaacaaggtctctcatgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gacctggagccccaccatcaaagctgcctcatgcttttgcaacaaggtctctcatgtttt 439

                                                                       
Query: 241 tttgggtgaccctgcatcctgagacttgagtgggggctccttctt-gggggcgcatctta 299
           |||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct: 440 tttgggtgacgctgcatcctgagacttgagtgggggctccttcttgggggggggatctta 499

                                                                       
Query: 300 catttgcgggctcatccgggatttgaggggtccccaaggtcttgaaataccacttggagt 359
           ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 catttgcgggctcgtctgggatttgaggggtccccaaggacttgaaataccacttggagt 559

                                                                       
Query: 360 tacgttttgtatgtgtgtggtatgtttgtgcggccactgagtctgtgccttgtttttcgg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tacgttttgtatgtgtgtggtatgtttgtgcggccactgagtctgtgccttgtttttcgg 619

                                                                       
Query: 420 agtctggtgttctggcagctgccattgaggactgtaaggacccacaggctgcggtggggg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 agtctggtgttctggcagctgccattgaggactgtaaggacccacaggctgcggtagggg 679

                                                                       
Query: 480 atgccctaaggcctgtaggctgcacccctggaagatgttccaagggagaccctggaggga 539
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 680 atgccctaaggcctgtaggctgcacccctggaagacgttccaagggagaccctggaggga 739

                                                                       
Query: 540 gtgcccagggtaaggaacagtcaggaggacctggctgttgcctggcagagtaaaggagag 599
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 740 gtgcccagggtaaggaacagtcaggaggatctggctgttgcctggcagagtaaaggagag 799

                 
Query: 600 agagtg 605
           ||||||
Sbjct: 800 agagtg 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)