BAC Information

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BAC

Clone NameMSMg01-501M15
Chromosome14 (Build37)
Map Location 93,726,427 - 93,843,750
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501M15.T7 (MSMg01no501_m15.b1)MSMg01-501M15.TJ (MSMg01no501_m15.g1)
ACCAG577300AG577301
length692682
length of high quality
(start - end)		633 (60 - 692)584 (57 - 640)
definitionCHROMAT_FILE: MSMg01no501_m15.b1 PHD_FILE: MSMg01no501_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:41 2005CHROMAT_FILE: MSMg01no501_m15.g1 PHD_FILE: MSMg01no501_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,726,427 - 93,727,059)(93,843,167 - 93,843,750)
sequence
CCGCTAAACGACTCACTAATTCAAGAGGAGGCGCGGAATTCCAAATATAA
CTGAATGGACTCATTCGTTTCACAGAACTGAGTAGATAATTGCTTATTTT
TGAGTCCCTCTGCTTCCGAGAGACTTGCAATGGAGTACAGTTGCTGTTGT
ATAGGCTTACTTCTCAGTTTGCCCTTTAAGTTGTGAAATATAATGATACA
AATGATAATGTAGCATCGAACGAGAACAAGTTTATGTTTTATTAAAGCTA
GTCGTGGAAAAAAATAATTAAAATTGTTACTACACATAATAAAGGTATGT
TAAGTTGTTATTGATGTATATTGAAGGAAATCACTTTATTCAAAACTTAA
AAACAGAGACAGGGAGTGATTAATGAGCTATAGTTGCTCACTGGCTCAGG
TTTTATGCTTAGCCTCTTTTAAAGACATTGCAGTAGAGATGTATTTAGTA
TAGTGCTTTGGCCTGCATTGCATATACGAACCACGTAATGAGCTAAGGTG
TGCTTATAGTTACTTCAGTGAAAGTCAGTGTTTTAGTACAACAAAAGTCT
GCATTCTAGCACGGACCAGAGTTCAGTTTTCACGGTCAATGTGCTTTGGG
CTGATGTAATACTTGAGATATAAAACTGCGTGCAGCTATGTGGGGGTAAA
AATGTAAGCTGTAGGGAATTGCATATGTTAGTAAATGAATAC

TGGCGGCCGCCTGTTTCTAAAATGGAGGTGACACTATAGAAGTTACAAAA
GAAGTCTGTATTCTCTTGGCTATGTGAAAATTAAAATATCATCTATTTAA
ATTCCAACTGTCTTCTAAAACAAGAAATACTTTTTTTCTATTCTTTTTCT
CTTTCTTTTCTTTCAAACCTATATATAATTATATATCTTCCATTCTGGTA
ATATTGTCATAAACCTGAATGTGTTACTGGTGCTTATATCAGGAATTCCT
GTAATTTTTTTTTCTTTCATGTTGTACTTTTAAAAACTCCATGAAGTCTT
GAATTTCATTGCAAAATGAAGTACTGAAAACTAAGACTCAATCAATTTGT
CTTCCATTTTACAATTTAATACCCAGGAATGTAGAGATTATGGTACACAG
TGCTAAATATAATAAAAAGAAAAGATGGAAAAGAAATGTACAAGCTAAAG
ATATAAAGAAACAATTTAAGAGAATTTAAATATAATCACACATAGGAATA
AAATCTAGATGTATCCTATGAAAATATATAAACATGTAATTTGCATCAAC
AATGGAACATATCTTTTGATATGAATTCTGAATGACAAACAGGAGCAAAG
CACACTGATGCTTGAGTGATGGGGGTAGCTCAACCTGTTGTTAGGTTAGT
CCAGTAATATTATGGTCAAATGTCACTTAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_m15.b1 MSMg01no501_m15.b1 CHROMAT_FILE:
MSMg01no501_m15.b1 PHD_FILE: MSMg01no501_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:41 2005
         (633 letters)



>mm_chr14_93726227_93727259
          Length = 1033

 Score = 1224 bits (633), Expect = 0.0
 Identities = 633/633 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcattcgtttcacagaactgagtagataattgcttatttttgagtccctctgcttccga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcattcgtttcacagaactgagtagataattgcttatttttgagtccctctgcttccga 260

                                                                       
Query: 61  gagacttgcaatggagtacagttgctgttgtataggcttacttctcagtttgccctttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagacttgcaatggagtacagttgctgttgtataggcttacttctcagtttgccctttaa 320

                                                                       
Query: 121 gttgtgaaatataatgatacaaatgataatgtagcatcgaacgagaacaagtttatgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgtgaaatataatgatacaaatgataatgtagcatcgaacgagaacaagtttatgttt 380

                                                                       
Query: 181 tattaaagctagtcgtggaaaaaaataattaaaattgttactacacataataaaggtatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattaaagctagtcgtggaaaaaaataattaaaattgttactacacataataaaggtatg 440

                                                                       
Query: 241 ttaagttgttattgatgtatattgaaggaaatcactttattcaaaacttaaaaacagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaagttgttattgatgtatattgaaggaaatcactttattcaaaacttaaaaacagaga 500

                                                                       
Query: 301 cagggagtgattaatgagctatagttgctcactggctcaggttttatgcttagcctcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagggagtgattaatgagctatagttgctcactggctcaggttttatgcttagcctcttt 560

                                                                       
Query: 361 taaagacattgcagtagagatgtatttagtatagtgctttggcctgcattgcatatacga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagacattgcagtagagatgtatttagtatagtgctttggcctgcattgcatatacga 620

                                                                       
Query: 421 accacgtaatgagctaaggtgtgcttatagttacttcagtgaaagtcagtgttttagtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accacgtaatgagctaaggtgtgcttatagttacttcagtgaaagtcagtgttttagtac 680

                                                                       
Query: 481 aacaaaagtctgcattctagcacggaccagagttcagttttcacggtcaatgtgctttgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaaaagtctgcattctagcacggaccagagttcagttttcacggtcaatgtgctttgg 740

                                                                       
Query: 541 gctgatgtaatacttgagatataaaactgcgtgcagctatgtgggggtaaaaatgtaagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctgatgtaatacttgagatataaaactgcgtgcagctatgtgggggtaaaaatgtaagc 800

                                            
Query: 601 tgtagggaattgcatatgttagtaaatgaatac 633
           |||||||||||||||||||||||||||||||||
Sbjct: 801 tgtagggaattgcatatgttagtaaatgaatac 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no501_m15.g1 MSMg01no501_m15.g1 CHROMAT_FILE:
MSMg01no501_m15.g1 PHD_FILE: MSMg01no501_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:41 2005
         (584 letters)



>mm_chr14_93842967_93843950
          Length = 984

 Score = 1098 bits (568), Expect = 0.0
 Identities = 580/584 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtattctcttggctatgtgaaaattaaaatatcatctatttaaattccaactgtcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tgtattctcttggctatgtgaaaattaaaatatcatctatttaaattccaactgtcttct 725

                                                                       
Query: 61  aaaacaagaaatactttttttctattctttttctctttcttttctttcaaacctatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aaaacaagaaatactttttttctattctttttctctttcttttctttcaaacctatatat 665

                                                                       
Query: 121 aattatatatcttccattctggtaatattgtcataaacctgaatgtgttactggtgctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aattatatatcttccattctggtaatattgtcataaacctgaatgtgttactggtgctta 605

                                                                       
Query: 181 tatcaggaattcctgtaatttttttttctttcatgttgtacttttaaaaactccatgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tatcaggaattcctgtaatttttttttctttcatgttgtacttttaaaaactccatgaag 545

                                                                       
Query: 241 tcttgaatttcattgcaaaatgaagtactgaaaactaagactcaatcaatttgtcttcca 300
           ||  |||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcaggaaagtcattgcaaaatgaagtactgaaaactaagactcaatcaatttgtcttcca 485

                                                                       
Query: 301 ttttacaatttaatacccaggaatgtagagattatggtacacagtgctaaatataataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttttacaatttaatacccaggaatgtagagattatggtacacagtgctaaatataataaa 425

                                                                       
Query: 361 aagaaaagatggaaaagaaatgtacaagctaaagatataaagaaacaatttaagagaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aagaaaagatggaaaagaaatgtacaagctaaagatataaagaaacaatttaagagaatt 365

                                                                       
Query: 421 taaatataatcacacataggaataaaatctagatgtatcctatgaaaatatataaacatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taaatataatcacacataggaataaaatctagatgtatcctatgaaaatatataaacatg 305

                                                                       
Query: 481 taatttgcatcaacaatggaacatatcttttgatatgaattctgaatgacaaacaggagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 taatttgcatcaacaatggaacatatcttttgatatgaattctgaatgacaaacaggagc 245

                                                       
Query: 541 aaagcacactgatgcttgagtgatgggggtagctcaacctgttg 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaagcacactgatgcttgagtgatgggggtagctcaacctgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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