BAC Information

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BAC

Clone NameMSMg01-501O09
Chromosome14 (Build37)
Map Location 53,031,193 - 53,031,774
singlet/doubletsinglet
Overlap genenone
Upstream geneEG638695, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510
Downstream geneOTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501O09.T7 (MSMg01no501_o09.b1)MSMg01-501O09.TJ (MSMg01no501_o09.g1)
ACCAG577384AG577385
length699662
length of high quality
(start - end)		582 (60 - 641)291 (340 - 630)
definitionCHROMAT_FILE: MSMg01no501_o09.b1 PHD_FILE: MSMg01no501_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:48 2005CHROMAT_FILE: MSMg01no501_o09.g1 PHD_FILE: MSMg01no501_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTTTTTCATACAGAGCGCGGAATTCTTTTNCTTTCAT
AAAAGAGAATGATATACACCTTTTCAATAACTATCTTACTCTATTTACAT
AGTCTAATTCCTCATCAATCTTTCCATTATTCAAGTGCTAGTGAATTAAA
AGTGATAAATAATTCAATCTCGCTTGTTGGACCCTTCTACTTCTTTGAGG
CCAAAGTCAGTCTTTGGGATTATACAATATGGATCTTGTTTCATGATAAC
AAATTCTAACGATCATTCATGCTCTTTAGTATTTCAGAATATTGTTTCAT
TTTATTGATTTATATGTCTATTGATTTAGATTGAATTTTGTAAAATGCAG
AATTGCAAAGGAACTTTTTATTGTGTGTTATAAAAGTATTGACCAGCACA
TGGTTGTTAGCAAGCTTGTGCATGTATATACACACAAGTTTCTGTTTGCC
ATCCAGGAGCTCTTTCTAAAGAATGTTAAAGATTTCAAATACCTGACCCA
ACCAGGCGACAAGGAAATGCTTTCATACTGCTTCTTGCTTACCAAGAAGT
CACCACCAAGGTTTCTCTCACAGAGATTCTCCCAGGTACACAGGGCCAAG
CAGACATGTACCAAACTATGAACCAAATATCTTTCCTCTCTTATTAGAAA
CAAAAAAACAAACCCCCAAAACTAGCCAATCAACCAACCAACCAACCAN

GGTTTCCGACCCGCAGGNGAACNANAGAAGGTGCAGTGACGGGGGGTGNT
CAGNTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTCGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTATATTCTGACTTTTTATTTATCTTTATTTTATGACAATGAG
TTGGAGTGCATACATGCATGCTTTTTTTCCTTTGGTTGGCTGGCATGGGG
TTATTATTTCCTATGTTCTTGGGTGTAGTTACTCTCCTTGGGTTGGTATT
TTTCTTCTGGTATCCTCTGTAGGGTGGGTTATTAGAAAGATATTGTTTAA
ATTTGGTTTTGTTATGAATACCTTATTTTCTCCATCTATGGTGATTGAAA
GATTTGCTGGATATAGTAGTCTGGGCTGGCATCTATGATCTCTCAGAGAC
TGTAAGACATCTGTCCAGGTTTTTCAGACTTTGAAAGTCTCTTTGGAGAA
GTTCTGAGAATTCTAGTTGATCTGTCTTTATATGTTACTTAGTCTTTATC
CCTTGTGACTTTTAATATTCTTTCCTTTGTTCTGTACATTTAGTGTTTTG
ATTATTACGTGGCAGGAGGATTTTCTTTTCTGTTATAATCTCCTTGGTGT
TCTTTAAGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_o09.b1 MSMg01no501_o09.b1 CHROMAT_FILE:
MSMg01no501_o09.b1 PHD_FILE: MSMg01no501_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:48 2005
         (582 letters)



>mm_chr14_53030993_53031974
          Length = 982

 Score = 1118 bits (578), Expect = 0.0
 Identities = 581/582 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatatacaccttttcaataactatcttactctatttacatagtctaattcctcatcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatatacaccttttcaataactatcttactctatttacatagtctaattcctcatcaat 260

                                                                       
Query: 61  ctttccattattcaagtgctagtgaattaaaagtgataaataattcaatctcgcttgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttccattattcaagtgctagtgaattaaaagtgataaataattcaatctcgcttgttg 320

                                                                       
Query: 121 gacccttctacttctttgaggccaaagtcagtctttgggattatacaatatggatcttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gacccttctacttctttgaggccaaagtcagtctttgggattatacaatatggatctagt 380

                                                                       
Query: 181 ttcatgataacaaattctaacgatcattcatgctctttagtatttcagaatattgtttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatgataacaaattctaacgatcattcatgctctttagtatttcagaatattgtttca 440

                                                                       
Query: 241 ttttattgatttatatgtctattgatttagattgaattttgtaaaatgcagaattgcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttattgatttatatgtctattgatttagattgaattttgtaaaatgcagaattgcaaa 500

                                                                       
Query: 301 ggaactttttattgtgtgttataaaagtattgaccagcacatggttgttagcaagcttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaactttttattgtgtgttataaaagtattgaccagcacatggttgttagcaagcttgt 560

                                                                       
Query: 361 gcatgtatatacacacaagtttctgtttgccatccaggagctctttctaaagaatgttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatgtatatacacacaagtttctgtttgccatccaggagctctttctaaagaatgttaa 620

                                                                       
Query: 421 agatttcaaatacctgacccaaccaggcgacaaggaaatgctttcatactgcttcttgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatttcaaatacctgacccaaccaggcgacaaggaaatgctttcatactgcttcttgct 680

                                                                       
Query: 481 taccaagaagtcaccaccaaggtttctctcacagagattctcccaggtacacagggccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taccaagaagtcaccaccaaggtttctctcacagagattctcccaggtacacagggccaa 740

                                                     
Query: 541 gcagacatgtaccaaactatgaaccaaatatctttcctctct 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcagacatgtaccaaactatgaaccaaatatctttcctctct 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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