BAC Information

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BAC

Clone NameMSMg01-502G09
Chromosome14 (Build37)
Map Location 19,308,198 - 19,308,853
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
Downstream geneLOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502G09.T7 (MSMg01no502_g09.b1)MSMg01-502G09.TJ (MSMg01no502_g09.g1)
ACCAG577762AG577763
length740750
length of high quality
(start - end)
571 (72 - 642)656 (74 - 729)
definitionCHROMAT_FILE: MSMg01no502_g09.b1 PHD_FILE: MSMg01no502_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:25 2005CHROMAT_FILE: MSMg01no502_g09.g1 PHD_FILE: MSMg01no502_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTACCTCAGTACCCCATTTTTAAGGGGTTATTTGAATTTCT
GGAGTCCAGCTTCTTGAGTTCTTTGTATATATTGGATATTAGTCCCCTAT
CAGATTTAGGAATGGTAAAAATCCTTTCCGAATCTGTTGGTGGCCTTTTT
GTCTTATTGAGAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTCAATTCTTGATCTTACAACACAAGGCATTGCTATTCAGT
ATAGTAATTTTCCTTCTTTGTCTATAACTTCAAGGCTTTTCCCCATGTTC
TCCTCTATTAATTTCAGTTTCTCTGATTTTATGTAAAGTTCCTTCATCCA
CTTGGACTTGAGCAAGGAGATGAGAGTGGATCAATGAATCAATCGCTTTC
TTCTACTTGATAACTGCCTGTTGTACCAGCACCATTTTTTGAAAATGCTG
TCTTTAATCCACTGGACGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACC
ATAGGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCACTGATCTACC
TGTCTGTCACTGTACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTA
GTACAGCTTAATATCAGGCATGGTGATTCCACCAGAGGTTCTTTTATTGT
TTTGAGAATAGTTTTTGCTATTCTAGGTTTTTTATTTTTC
CGATGCAGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCAAAAGTCAGAAACTAAGAGTTAAT
GCATAAATGACTGCAGGACAGAGGGTGGGAGGCAAGCTGCAAGTACCAAG
CAAGGTCTGTGAGAGCAGCTTCCCAGAGGGCAATGTGGAGGTGCCAGGCC
ATGGTTTGTGGGCTCAGCCTCTGCCGGAAGGACAGACAGCATGGAGGGAT
AATGTGTTAGGACCAAGGTGACAATCTCATCAAAAGCCTGACAGCTAGTG
CACTAGGGATATTCTGGTGACTTACAGGGAAACAAGATGAGAAGTTTGAT
ATCCCTTCAGTGGCTTGATAAGTTGCTAGCATGTTTGCTAAGGCTTTTGA
GTCTGCTTCATCGGGGAGATAATGTAACAGAGGTAGGAAGGAAGATTGGG
CTATTTACATTTTTCCCCAAGAGGGGTAGGGTAGCTCAATATTTTCTGCT
CTTTTGAATTTATCAAATTCTCCCATACCCTAGGACTGTCATCAGCTGAA
GACAGAATTTCAGTACCTCCCCAAAGCAGGGTAGCTTTAGTTATTCATCC
TATGTTTCTATTCCTCCCCCAAAATCCAGTACTTGTAAAAACCCCAGTGT
GTAACTGTGGCTCTCGCATTAGCTGTATATGCACAGACACAGCTCTAGAT
GCTACCAGAAAACACATCATTGTTGGAATGCAGTCCACGTTCTCCTGTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_g09.g1 MSMg01no502_g09.g1 CHROMAT_FILE:
MSMg01no502_g09.g1 PHD_FILE: MSMg01no502_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:25 2005
         (656 letters)



>mm_chr14_19307998_19309053
          Length = 1056

 Score = 1253 bits (648), Expect = 0.0
 Identities = 654/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaaaagtcagaaactaagagttaatgcataaatgactgcaggacagagggtgggaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaaaagtcagaaactaagagttaatgcataaatgactgcaggacagagggtgggaggc 260

                                                                       
Query: 61  aagctgcaagtaccaagcaaggtctgtgagagcagcttcccagagggcaatgtggaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctgcaagtaccaagcaaggtctgtgagagcagcttcccagagggcaatgtggaggtg 320

                                                                       
Query: 121 ccaggccatggtttgtgggctcagcctctgccggaaggacagacagcatggagggataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggccatggtttgtgggctcagcctctgccggaaggacagacagcatggagggataat 380

                                                                       
Query: 181 gtgttaggaccaaggtgacaatctcatcaaaagcctgacagctagtgcactagggatatt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgttaggatcaaggtgacaatctcatcaaaagcctgacagctagtgcactagggatatt 440

                                                                       
Query: 241 ctggtgacttacagggaaacaagatgagaagtttgatatcccttcagtggcttgataagt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggggacttacagggaaacaagatgagaagtttgatatcccttcagtggcttgataagt 500

                                                                       
Query: 301 tgctagcatgtttgctaaggcttttgagtctgcttcatcggggagataatgtaacagagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctagcatgtttgctaaggcttttgagtctgcttcatcggggagataatgtaacagagg 560

                                                                       
Query: 361 taggaaggaagattgggctatttacatttttccccaagaggggtagggtagctcaatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggaaggaagattgggctatttacatttttccccaagaggggtagggtagctcaatatt 620

                                                                       
Query: 421 ttctgctcttttgaatttatcaaattctcccataccctaggactgtcatcagctgaagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgctcttttgaatttatcaaattctcccataccctaggactgtcatcagctgaagac 680

                                                                       
Query: 481 agaatttcagtacctccccaaagcagggtagctttagttattcatcctatgtttctattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaatttcagtacctccccaaagcagggtagctttagttattcatcctatgtttctattc 740

                                                                       
Query: 541 ctcccccaaaatccagtacttgtaaaaaccccagtgtgtaactgtggctctcgcattagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcccccaaaatccagtacttgtaaaaaccccagtgtgtaactgtggctctcgcattagc 800

                                                                   
Query: 601 tgtatatgcacagacacagctctagatgctaccagaaaacacatcattgttggaat 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtatatgcacagacacagctctagatgctaccagaaaacacatcattgttggaat 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)