BAC Information

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BAC

Clone NameMSMg01-502J02
Chromosome14 (Build37)
Map Location 14,758,222 - 14,758,698
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042022, LOC100042026, EG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281
Downstream geneThoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502J02.T7 (MSMg01no502_j02.b1)MSMg01-502J02.TJ (MSMg01no502_j02.g1)
ACCAG577891AG577892
length957732
length of high quality
(start - end)
---658 (75 - 732)
definitionCHROMAT_FILE: MSMg01no502_j02.b1 PHD_FILE: MSMg01no502_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:38 2005CHROMAT_FILE: MSMg01no502_j02.g1 PHD_FILE: MSMg01no502_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGAGCGCCACCGCCCTTTTCCCCCCCGCTTTTTTTCCGTCCCGCTATTC
TCCGTTTTTCCGCCCTTTCGGTATGTCGATTTACCGTATTCCCCATCTCC
ACCCGAGTGCCGGGTTGATTTTCCTCTCCTCCCCTCTCCCTCCACTCTTT
ATGCTGTTCACTAGCGGTGTCACTTAACTGTATCGACAGAACGCCCCCGC
CGCCCCAGCCGGTGGTGCGCCCGCTCCAGTGCCTTTTTCCCCACCACACC
CCCATTTTCCTTCTGTCCTGGGCAGCTCTGCCTCGTCTCCCTCGTCCGTC
GTTGGCCGGGCCACTGACCATCTTCGCGACTTGCCCTCATACCCGCGAGG
TGCAGGGACCGCCGGGCCAGACGAGCACTACCGCGCACGTGTTAGTAGGG
CGGGCTTCCTGAGCTAGCCGCGCTGGTACGGGCCCGATGTGTATGACCGG
TTGCGGGAACCGCTTTATCTGGTAGCACCAGACCGGAGGCAACGGGAAGC
TTGAAGTAGCTGAGCGGTAGTTGCGTGACAATGCAGGTCCGTNTTCGCGG
CGCCCCCCCCCCCTTTCAAAAAAAAATAAAAACACACAATAAAATTTGTT
GTTTGTGGGTGGGNTTTTNNNTTCCGCCGGATGTTGGCGGCGGCTTCTTA
TAAAAACNNNNAAAAAATTAAAAGCGCGGGAGCATCAGTTTTCTTCGGAA
GCGGCCNNNANAAAAAATTTAAAAAATAAAGCGGNTNGNTTCGTTNNCGN
AGGAGNNATTGATNTNAGTTTTCCGTATTNTATTTTTTTTTGCTGTTGCT
GGTTCTGCTAGCNTGGGGGGGGNNGCTAACNCTAAAATTAAATGNCTTCG
TTTGTTTCANCCAAAACCNNCCCCNNNTTTGNNNGGTAAAACCTTAGGNA
GACCGCCCCGGCCNNCACNCAATAAATTTTTTTAAAACAAGCCTCGGCTT
CTGCCTA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATAGAGCAAAGCAATTGTTTTTCTG
TTGCAGAGAACACAGGGTGGTAATGTTTGGGCTACATTCTTATTTTCTGG
AGAAATGGTACTTGAGAGCTTGAGTATTCCAACTAAGGCAAAAACAGTGT
GTGGATTAATAGATTAACCACTGGAGATGCAGCTCAGTGGTAGAACACTT
GCTTAGAGATGTAGTTCTCTGTGTTCTGATGGACTCTCCCATCAGGGTAG
AGAATATTTCTTTGCTCTTTGTTATTCATGTTTTTTTAAATGACACAAGC
TCCCAAGTAGTCCAATGCATGCTGTCCTTGTAGACTCCTGATCCTCCTGC
CTCTACCTCCTTTGTGCTAGGATTGAAAGCATATCATCATACCTGCTGTT
TCTTTATTTGCCAGGAAAATACACTGGTTAATCCATGTCAGATAATTGCT
AGATAGTGGATATCTGTATTAGTGGTATTTTAACAAGAAGATTTTTTGAA
AGTGAGGTTGCTGGAAACAATTAGGTTTTCTCTTCTGTGTGCATGGGAGT
AAGTCTGACCCCGTAATACATGTACGACCGTTTTTCCTGCTACTGTGCTG
AAAAGTTCATTTAAAAAGAAACAGAAAATGAATAATGGATCCTACTGAGT
GTCATGGCATTGCCTTTAGTTTGAGCACTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_j02.g1 MSMg01no502_j02.g1 CHROMAT_FILE:
MSMg01no502_j02.g1 PHD_FILE: MSMg01no502_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:38 2005
         (658 letters)



>mm_chr14_14757640_14758698
          Length = 1059

 Score =  899 bits (465), Expect = 0.0
 Identities = 474/477 (99%), Gaps = 1/477 (0%)
 Strand = Plus / Minus

                                                                        
Query: 183  agatgtagttctctgtgttctgatggactctcccatcagggtagagaatatttctttgct 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 agatgtagttctctgtgttctgatggactctcccatcagggtagagaatatttctttgct 1000

                                                                        
Query: 243  ctttgttattcatgtttttttaaatgacacaagctcccaagtagtccaatgcatgctgtc 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  ctttgttattcatgtttttttaaatgacacaagctcccaagtagtccaatgcatgctgtc 940

                                                                        
Query: 303  cttgtagactcctgatcctcctgcctctacctcctttgtgctaggattgaaagcatatca 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939  cttgtagactcctgatcctcctgcctctacctcctttgtgctaggattgaaagcatatca 880

                                                                        
Query: 363  tcatacctgctgtttctttatttgccaggaaaatacactggttaatccatgtcagataat 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879  tcatacctgctgtttctttatttgccaggaaaatacactggttaatccatgtcagataat 820

                                                                        
Query: 423  tgctagatagtggatatctgtattagtggtattttaacaagaaga-ttttttgaaagtga 481
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 819  tgctagatagtggatatctgtattagtggtattttaacaagaagatttttttgaaagtga 760

                                                                        
Query: 482  ggttgctggaaacaattaggttttctcttctgtgtgcatgggagtaagtctgaccccgta 541
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  ggtttctggaaacaattaggttttctcttctgtgtgcatgggagtaagtctgaccccgta 700

                                                                        
Query: 542  atacatgtacgaccgtttttcctgctactgtgctgaaaagttcatttaaaaagaaacaga 601
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 699  atacatgtacgaccgtttttcctgctactgtgctgaaaagctcatttaaaaagaaacaga 640

                                                                     
Query: 602  aaatgaataatggatcctactgagtgtcatggcattgcctttagtttgagcacttgg 658
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639  aaatgaataatggatcctactgagtgtcatggcattgcctttagtttgagcacttgg 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space:   679752
Effective search space used:   679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)