BAC Information

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BAC

Clone NameMSMg01-502M01
Chromosome14 (Build37)
Map Location 98,232,685 - 98,232,930
singlet/doubletsinglet
Overlap geneDach1
Upstream geneLOC668654, EG668659
Downstream geneLOC635593, LOC619716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502M01.T7 (MSMg01no502_m01.b1)MSMg01-502M01.TJ (MSMg01no502_m01.g1)
ACCAG578033AG578034
length734700
length of high quality
(start - end)
246 (76 - 321)579 (60 - 638)
definitionCHROMAT_FILE: MSMg01no502_m01.b1 PHD_FILE: MSMg01no502_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:52 2005CHROMAT_FILE: MSMg01no502_m01.g1 PHD_FILE: MSMg01no502_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCGCGGA
ATTCAGTTAAGTTTCGAAAAACCTTAGAAGCTGTGTTTTATTATTAAGCA
ACCAGAGAGTGGGAGTGAAAGAGCTGCTACATAGAAAAAGAATTAAGCCA
GAAAACTCTAGGTCGAACATAGCACACAATAATTATATATATAATGGTTT
TGAGTGCATTAAGAGTTACGCTGTTCTGCTGGAGACAGACTATCTGTCTA
TATTCTCGTTCAAGTCAAGCCAAAGTTGAAATTCCTGGTTCAAAGTTTTC
ATACTAACTTAAAAAAAAAGTTTATATCCTTGAGAATGTCTAGCAATGGC
ATTAAATTCCACCTCCTGTGTAATTTCAATAGCAAATTTCAGACTGGCAC
ATTCACAGACCATGACAAAATACTTTATACTCCAAATATAGCATTTTGCA
TTGCTGAATTCATGGTGATAGAATTTTTAACTGCAATTTTCAGTAATAAC
TTTGGACCTAAATAACTTCTCTGACAAAGCACACAGGATTTTTTTTTAAT
ATGTCGACTGTGTGCTCACATTTTACATTTAAAATATGAAGGAACAGCTA
AATTTGATGAAAATTATACATCAGAAAAGTACATATCCCTATGATCAGTT
GTAAGGCTAAGTAAGTTTTGTTTTCACTAAACTCTTACTTGCCTGTGACA
TTCTCTCCTAATATTATTCTCAGATTATTAAAGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACAGCGACGAAAGCAGCAAACACAGGATATATGGGCATATAC
CAGGTACTTGGTGTATATACTACTGCTTTCTGCTTAGTATTTTTTTTTGA
GACTCCTGAGTGTGTGAATGAACAGATTTTTGATTCTTGGGCCTGTTCCT
GGTCCTCCTTTTCTTTCTGTTGGTTTGCTTTGTGTTGTCTTGATGTAATG
GGTGTTGTTTTATCTTATGATGTTGGATTTTGCCAATAAATAGCTAATTT
TTCATATTGATCATGGCCACAGTGGATGAAATGCAATCTCAAAACCAAAC
AAATAGAATGTGAGAAAAACAAAGAAGAAGAAGAAAAGAAGAAAGAGGAT
GAAGAAGAAGAGGGAGGAGGAACAGGAAAAGAAACACCATAACCAAAAGC
ACCTTGGGGCAGGGTGGGGAGTGTATTTCATTTACATCATCCAGGGATAT
CAGGGCAAGAACTCAAAACTGGGACCTGAAGGCAGGAAGCAAAAGTCAAG
GAGGATGCTGCTCCATGGTTTGTTTCCATGGTTTGCTCGGTGTGCTTTTT
TATGTATCCTAGGAGAGCTATCTCCTATGAGGGCTCTCACCCTCAATGTT
CTTGGTCTTCCCAAGGCAATCACCTAACCCTCAAGAGACTGGAGGCCACN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_m01.b1 MSMg01no502_m01.b1 CHROMAT_FILE:
MSMg01no502_m01.b1 PHD_FILE: MSMg01no502_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:52 2005
         (246 letters)



>mm_chr14_98232485_98233130
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagctgtgttttattattaagcaaccagagagtgggagtgaaagagctgctacataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agaagctgtgttttattattaagcaaccagagagtgggagtgaaagagctgctacataga 387

                                                                       
Query: 61  aaaagaattaagccagaaaactctaggtcgaacatagcacacaataattatatatataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaagaattaagccagaaaactctaggtcgaacatagcacacaataattatatatataat 327

                                                                       
Query: 121 ggttttgagtgcattaagagttacgctgttctgctggagacagactatctgtctatattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggttttgagtgcattaagagttacgctgttctgctggagacagactatctgtctatattc 267

                                                                       
Query: 181 tcgttcaagtcaagccaaagttgaaattcctggttcaaagttttcatactaacttaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcgttcaagtcaagccaaagttgaaattcctggttcaaagttttcatactaacttaaaaa 207

                 
Query: 241 aaaagt 246
           ||||||
Sbjct: 206 aaaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)