BAC Information

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BAC

Clone NameMSMg01-502P24
Chromosome14 (Build37)
Map Location 23,056,912 - 23,141,444
singlet/doubletdoublet
Overlap gene1700112E06Rik
Upstream geneAdk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075
Downstream geneEG435392, LOC665068, Kcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P24.T7 (MSMg01no502_p24.b1)MSMg01-502P24.TJ (MSMg01no502_p24.g1)
ACCAG578220AG578221
length761717
length of high quality
(start - end)		496 (18 - 513)214 (59 - 272)
definitionCHROMAT_FILE: MSMg01no502_p24.b1 PHD_FILE: MSMg01no502_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:09 2005CHROMAT_FILE: MSMg01no502_p24.g1 PHD_FILE: MSMg01no502_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,056,912 - 23,057,403)(23,141,231 - 23,141,444)
sequence
ACTATAGTCCGAGGATCCGCGGAATTCTTGTTCTTTTCTGCTTCCACTTC
TCAAGGGTCAGGGCTGTGATTTTAATGAATTCTTGACAGGAATCCAGCAG
GCTCCTGAGCTCAGCCCTTTCTTAGACTCCTGGCCCTACATTCTTGTCTT
GGGTACTGGTGCAAGTATTTGTCTTTATTGGTAGACAATTAGACATTGGT
AGACAATCTTTTGCCTTCTGTAATGATTAGTGGATATGAACAGTCCCCCT
CAGGATGGAATCTCCACCTTTCCCTGATGTCTGACAGTGAGGTTCTGTGT
AGGAAGCACCCACAGGGCCCTTTCTAGAATAAAACAGTTTGTGATCTGCA
CACAGACTGCACACAGACTGCACACATCTGTCCCCAGAGGAGGCCTTCAT
CATTCTGTCCTTGTCATCATTAGTGACCGATGAGCTTCTGTCAGAGGAAG
GACCTCTGTGCTGGTCCTCCTGAAGCCTCAGTTGCTCTTCCCAAGGATTG
CAGACAGCTCTCCACAGAGACCCCGAGTCCGACTACTGAGGGTATCCACA
GGCCATCCCAGACTTGGGCTGCATGGGTGGCTCTCAATGTTTTTGACTAT
GTTTGGCATTAAGAAAAAATTTTAAATCCCCAACTATGTGTGTGTAGATG
TTTATTGTACCCACATAAAAAGTTTCTTATGCCCCGCAAGTGTTGGCCAT
TATCTTTATTCCCCCCACTCGGGAGGCAAAGCCAGGTAAATTCTGATTTT
AGGTCCGAATG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTTCCATCCCAAGGGCTTCCTAAGATAAAATTGGCCAAACCATGCAACCC
TGATTAATTTCCCTATGCTGCAACAACAACAAAAAGAAATAGCAAAACTC
ACCATGAGAGGGGAGCCCAAGCATGGGGGTGGGCAGCACCTGTGAAATGC
ACTTTCCTTTCTTGGAACTGAAAGGCTCATCTCTCAATCCTTTGAGGTGC
TTCTCTGATTTTTTTAACGTTTTGTGTCCTTCCAAAGGTAGACACAATCA
AAGATATTTATGTTTTTGTAGAAAGATATAGCTGTCTTTTGTGAGGCTAT
GCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGTAA
GGGTCACCAGGCCTTCCCAAGGGAGGAGCTAGAGAAAGTACCCAAGAAAC
TAAAGGGATCTGCAACCCTATAGGTGGGACTACAATATGAACTACCCAGT
ACCCCCCAGAGCTCATGTCTCTAGCTGCATGTGTATCAGAAGATAGCCTA
GTCGGCCATCATTGGAAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATG
CCTCAGTACAGGGGAACACAAGGCCAACAATGGGAGGGGTGGGGAAGGGA
ATCTTTTTTCTTTTATCTCCCTCCTCTTTCCTCTTTTTTTCCCTTCTCCC
TCTTTCTCTTCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p24.b1 MSMg01no502_p24.b1 CHROMAT_FILE:
MSMg01no502_p24.b1 PHD_FILE: MSMg01no502_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:09 2005
         (496 letters)



>mm_chr14_23056708_23057603
          Length = 896

 Score =  905 bits (468), Expect = 0.0
 Identities = 486/492 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgttcttttctgcttccacttctcaagggtcagggctgtgattttaatgaatt 64
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattcttgttctttcctgcttccacttctcaagggtcagggctgttattttaatgaatt 264

                                                                       
Query: 65  cttgacaggaatccagcaggctcctgagctcagccctttcttagactcctggccctacat 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 cttgacaggaatccagcaggctcctgagcgcagccctttcttagactcctggccctacat 324

                                                                       
Query: 125 tcttgtcttgggtactggtgcaagtatttgtctttattggtagacaattagacattggta 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 tcttgtcttgggtactggtgcaagtatttatctttattggtagacaattagacattggta 384

                                                                       
Query: 185 gacaatcttttgccttctgtaatgattagtggatatgaacagtccccctcaggatggaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacaatcttttgccttctgtaatgattagtggatatgaacagtccccctcaggatggaat 444

                                                                       
Query: 245 ctccacctttccctgatgtctgacagtgaggttctgtgtaggaagcacccacagggccct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctccacctttccctgatgtctgacagtgaggttctgtgtaggaagcacccacagggccct 504

                                                                       
Query: 305 ttctagaataaaacagtttgtgatctgcacacagactgcacacagactgcacacatctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctagaataaaacagtttgtgatctgcacacagactgcacacagactgcacacatctgt 564

                                                                       
Query: 365 ccccagaggaggccttcatcattctgtccttgtcatcattagtgaccgatgagcttctgt 424
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 565 ccccagaggaggccttcatcattctgtccttgtcatcattagtgaccgttgagcttctgt 624

                                                                       
Query: 425 cagaggaaggacctctgtgctggtcctcctgaagcctcagttgctcttcccaaggattgc 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 625 cagaggaaggacctctgtgctggtcctcctgaagcctcagttgctcttcccaagcattgc 684

                       
Query: 485 agacagctctcc 496
           ||||||||||||
Sbjct: 685 agacagctctcc 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no502_p24.g1 MSMg01no502_p24.g1 CHROMAT_FILE:
MSMg01no502_p24.g1 PHD_FILE: MSMg01no502_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:09 2005
         (214 letters)



>mm_chr14_23141031_23141644
          Length = 614

 Score =  414 bits (214), Expect = e-120
 Identities = 214/214 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaagggcttcctaagataaaattggccaaaccatgcaaccctgattaatttccctatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ccaagggcttcctaagataaaattggccaaaccatgcaaccctgattaatttccctatgc 355

                                                                       
Query: 61  tgcaacaacaacaaaaagaaatagcaaaactcaccatgagaggggagcccaagcatgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgcaacaacaacaaaaagaaatagcaaaactcaccatgagaggggagcccaagcatgggg 295

                                                                       
Query: 121 gtgggcagcacctgtgaaatgcactttcctttcttggaactgaaaggctcatctctcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gtgggcagcacctgtgaaatgcactttcctttcttggaactgaaaggctcatctctcaat 235

                                             
Query: 181 cctttgaggtgcttctctgatttttttaacgttt 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 cctttgaggtgcttctctgatttttttaacgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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