BAC Information

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BAC

Clone NameMSMg01-503D15
Chromosome14 (Build37)
Map Location 15,448,505 - 15,448,723
singlet/doubletsinglet
Overlap genenone
Upstream geneA430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
Downstream geneLOC100042147, Slc4a7, Nek10, Lrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503D15.T7 (MSMg01no503_d15.b1)MSMg01-503D15.TJ (MSMg01no503_d15.g1)
ACCAG578393AG578394
length713732
length of high quality
(start - end)
602 (83 - 684)219 (334 - 552)
definitionCHROMAT_FILE: MSMg01no503_d15.b1 PHD_FILE: MSMg01no503_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:27 2005CHROMAT_FILE: MSMg01no503_d15.g1 PHD_FILE: MSMg01no503_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTTCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCA
AATCCGCGGAATTCTGCACTATTCCCTCTGATCCTGGGCTTTCTATGGTT
AGGAGACTTTTAATGACTGCTTCTATTTCTTTAGGGGTTATGCGACTGTT
TAGAACATTATCTAATCCTGATTTAATTTTGGTCCCTGGTATGTGTCTAG
AAAATTGTCCATTTCATCCAGGTTTTCCAGTTTTCATGAGTATAGCCTTT
TGTAATAGGATCTGATGATTTTTTTTGGATTTCCTCAGGTTCTGTTGTTA
TGTCTTCCTTTTCATTTCTGATTTTGTATTTTAGTATACTGTCTCTGTGC
CCTCTAGTAAGTCTGGCTAACGGTTTATCTATTTTGTTGATTTTCTCAAA
GAACCAGATACGGTGTGACTGATTCTTTGAATAGTTCTTTTTGTTTCCAC
TTGGTTGTTTCAGCCCAGAGCTTGATTATTTCCTGCCATCTACTCCTCTT
GGGCGAATTTGCTTCCTTTTTATTCTAGAGCGTTCAGTTGTGCTGTCAAG
CTGCTAGTGTATGCTCTGTTCAGTTTCTTTTTGGAGGCACTCAGAGCTAT
GTGATTTACTCTTATTACTGCTTTCCTTGTGTCCCATAAGTTTGGGTATG
TTGTGGCTTCACTTTCATTAAATTCTAAAAAGTCTCTAATTTTTTTATTC
TTACTTGACCAAG
CCTTTTTTTACCAGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCCGAAAATCAGTGGAGAAAATATACT
GTGATCTAAATGTTCTTGACACAACTGGTATCCACATGCAAAAGAATGAA
TCTTATAACATAAATTTTTTTTTTTGCTCAAAATGGATAGTGTGTTAGTG
TACCAAGACAAAGGTTGTGCTGTGCTAGAGTTATCTAGGGAAGTTCCGGG
GACAGCCTGTATATAGAGGGGGGAAAGGAGGACTCTGGAGAGGAATCAGT
GTGGTTTTCATGGAAGGGATGGGAATATTTTTAGAACATCTATGCAAAGA
TTGGTCATCCTGTAAAACCTCTTCTGCCTGACATTCTTGAACCTGGGGCT
AGGGGTCCTGAGTATGAAGGCCCAGTGAGGGCATGGTCACAGGAATGAGG
CTCTGGGGTGTATGGTTTGAATGAAAGGTGTGGCTGAAGGTGAGTTTTGC
AATCAATTCTTCATCATAAGTATAACCTGGTCCTAGGAAGGTAGGTCCCT
TCAGGGTTAGCAGAGCCTGGGTGGCTTCCAGGGGACAGACTACATTTCCT
GTTGCCTTTGCAGCAGGTGCAGTCAAGTAGTCAGTAACCAGTTTATAATG
AATGGAATGCGCATGGAATCCATCTGTTTTCAGTTTAACCCGTATAAATT
CTCTGTACAGAATTCCTCCGAGCTATCTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_d15.g1 MSMg01no503_d15.g1 CHROMAT_FILE:
MSMg01no503_d15.g1 PHD_FILE: MSMg01no503_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:27 2005
         (219 letters)



>mm_chr14_15448305_15448923
          Length = 619

 Score =  424 bits (219), Expect = e-123
 Identities = 219/219 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacatctatgcaaagattggtcatcctgtaaaacctcttctgcctgacattcttgaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaacatctatgcaaagattggtcatcctgtaaaacctcttctgcctgacattcttgaacc 360

                                                                       
Query: 61  tggggctaggggtcctgagtatgaaggcccagtgagggcatggtcacaggaatgaggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tggggctaggggtcctgagtatgaaggcccagtgagggcatggtcacaggaatgaggctc 300

                                                                       
Query: 121 tggggtgtatggtttgaatgaaaggtgtggctgaaggtgagttttgcaatcaattcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tggggtgtatggtttgaatgaaaggtgtggctgaaggtgagttttgcaatcaattcttca 240

                                                  
Query: 181 tcataagtataacctggtcctaggaaggtaggtcccttc 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tcataagtataacctggtcctaggaaggtaggtcccttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)