BAC Information

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BAC

Clone NameMSMg01-503E15
Chromosome14 (Build37)
Map Location 41,521,492 - 41,522,044
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
Downstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503E15.T7 (MSMg01no503_e15.b1)MSMg01-503E15.TJ (MSMg01no503_e15.g1)
ACCAG578440AG578441
length704719
length of high quality
(start - end)
490 (83 - 572)553 (88 - 640)
definitionCHROMAT_FILE: MSMg01no503_e15.b1 PHD_FILE: MSMg01no503_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:32 2005CHROMAT_FILE: MSMg01no503_e15.g1 PHD_FILE: MSMg01no503_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTCTTTTCCCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCC
AAAATCCGCGGAATTCATGCAGTTGACTCCTTCTTAACAGTCTGCTTTAC
GGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATC
TCCCTTGCGCCGGTCCCGAGTTTTCTTGTATTTTTTCGTCCCGGGTTTCA
GCACCAATTCTTAATAGCGTTCGCGCGCCCGACGAGGAAGAACACAACAA
ACCAAAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCTAG
GAGCGCAAACCCCCAGCCCCAAAATTTTTGCCCCTTCTATCTTACATCTT
TAGGAGCCAGAGCTCCGGCGCCGCCAAAGCGCAGAGCGCGCTCTATTGTT
TACATCTTTAGGCAGCGAGAGAGCGCAGGGCGCGCAGAGCCAGAGAGATG
CCAGCAAGAGAGAAAATGGCGGAAACCCCCGTCCCCTTTAAGGAGGAGTT
ATCCTTCACTTAGGACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCG
AGCTGACGTTCACGGGAAAAGCAGAGTACTAGTAGTCGTAAAATACTCTT
GGCACATGCGCAGATTATTTGTTTACCACTTATAACACAGGATGTCAGCG
CCATCTTGTGACGGCGAATGCGGGGGCGGCTCCCAACAAGTGCTGTCTTC
ACGG
TTTTTCATTTTTCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAATGTGTAAA
TGAGGACTTTCTTCAATAGCAGAAGGTGGGCGCTGAGGTATAAGTGAAGC
AAAGGGAAGAGACGAGCATGGAGTCAGAACTATTCCAGAAATCAAGAAAG
CCTAGAGACAGCGGAGCTTGAGCACAAGATAGGCACTGCAGACTTTATAA
GCCTTATATCAACACATTAGAACTTGGACAAGGAAGTCTCACTGGACCCA
AAGGGATGCATGATAGTTCTTTGCCTTATTGAGTGGGCATGAGAGAACAA
TTTCTGATTCCTTCATAGATTCCCTTAGTCACACATATGTGGAAAAACAA
AATGTTGACTTCTTCCATTCTTGGCGGTGGAAGAACTGAAATATAAAAAT
GTTTCTCTTCAGAGATAAAACACTGCAGACACCCAAGAAAGAAAGCAAAG
GGTTTCAACCGAAAACTATGAGTGGCCAAGAAGCCCTGGAAACATCCCCA
AAGAATGAAGCTGTGATCAGGTTCAGTAAGCAAAAGTCTAGTCACTGTGG
AGAAGAGAAGGCACTATCCCCAGAACCTAGGAATAAATTGCCAGATATAT
CTGGCCAGTGGACTCAGAAATTATACACACAGGACCAGTGGAGGGAACAC
AGTAGTCCTCACTTTAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_e15.g1 MSMg01no503_e15.g1 CHROMAT_FILE:
MSMg01no503_e15.g1 PHD_FILE: MSMg01no503_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:32 2005
         (553 letters)



>mm_chr14_41521292_41522244
          Length = 953

 Score = 1054 bits (545), Expect = 0.0
 Identities = 551/553 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaatgtgtaaatgaggactttcttcaatagcagaaggtgggcgctgaggtataagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaatgtgtaaatgaggactttcttcaatagcagaaggtgggcgctgaggtataagtga 260

                                                                       
Query: 61  agcaaagggaagagacgagcatggagtcagaactattccagaaatcaagaaagcctagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaaagggaagagacgagcatggagtcagaactattccagaaatcaagaaagcctagag 320

                                                                       
Query: 121 acagcggagcttgagcacaagataggcactgcagactttataagccttatatcaacacat 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagtggagcttgagcacaagataggcactgcagactttataagccttatatcaacacat 380

                                                                       
Query: 181 tagaacttggacaaggaagtctcactggacccaaagggatgcatgatagttctttgcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaacttggacaaggaagtctcactggacccaaagggatgcatgatagttctttgcctt 440

                                                                       
Query: 241 attgagtgggcatgagagaacaatttctgattccttcatagattcccttagtcacacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgagtgggcatgagagaacaatttctgattccttcatagattcccttagtcacacata 500

                                                                       
Query: 301 tgtggaaaaacaaaatgttgacttcttccattcttggcggtggaagaactgaaatataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtggaaaaacaaaatgttgacttcttccattcttggcggtggaagaactgaaatataaa 560

                                                                       
Query: 361 aatgtttctcttcagagataaaacactgcagacacccaagaaagaaagcaaagggtttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtttctcttcagagataaaacactgcagacacccaagaaagaaagcaaagggtttca 620

                                                                       
Query: 421 accgaaaactatgagtggccaagaagccctggaaacatccccaaagaatgaagctgtgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 accgaaaactatgagtggccaagaagccctggaaacatccccaaagaatgaagctctgat 680

                                                                       
Query: 481 caggttcagtaagcaaaagtctagtcactgtggagaagagaaggcactatccccagaacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caggttcagtaagcaaaagtctagtcactgtggagaagagaaggcactatccccagaacc 740

                        
Query: 541 taggaataaattg 553
           |||||||||||||
Sbjct: 741 taggaataaattg 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)