BAC Information

Click to search

BAC

Clone NameMSMg01-503E17
Chromosome14 (Build37)
Map Location 79,639,424 - 79,639,977
singlet/doubletsinglet
Overlap geneAU017455
Upstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765
Downstream gene1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503E17.T7 (MSMg01no503_e17.b1)MSMg01-503E17.TJ (MSMg01no503_e17.g1)
ACCAG578444AG578445
length734732
length of high quality
(start - end)
515 (80 - 594)555 (83 - 637)
definitionCHROMAT_FILE: MSMg01no503_e17.b1 PHD_FILE: MSMg01no503_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:32 2005CHROMAT_FILE: MSMg01no503_e17.g1 PHD_FILE: MSMg01no503_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTCTTCCCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCACCTGTTCCATACCGAATGGCTGAGAAGCACCTG
AAAAAATGTTCAGCATTCTTAATCATCAGGGAAATGCAAATCAAAACAGC
CCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCCCCAT
TGCTGGTGGGATTGCAAGCTTGTACAACCACACTGGAAATCAGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACTCTCAGGATCCTGCAATACCT
CTCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAAGGCACATGC
TCCACTATGTTCATAGCAGCCTTATATTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGTCCCTCAACAGAGGAAATGATACAGAAAATGTGGTACATT
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGGCAAATGGATTGACTTGGAGGGCATCATCCTGAGTGAGGTAACCC
AATTACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGATAGTAG
CCCATAAACTTAGAATACCCAAGATACAAGATACAAAGCACATGATACTC
ACGAAGAATGGAGACCAAAGTGTGGACACTTTGG
CTTTATTTTTCGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCTGTGCGTGCGTGC
GGGTGACATGTGCCAGCCTGAGACATGGGGAGTTGAATGGGTGTCAGGTG
GTTTCCGAAAGTGTCAGGTAGGCATCCCATCGGAATCCAGAGGAGAGAGT
CATCACTTGAACGTGTTTGTTAAACAAGTAAGAGTAGGAAAAAGATGCCC
CAATAAACAAAACAGAACAGTAAAATGATAAAACAAAAATGTAAAACCCT
GCAAAGTCTAGCCTATGAAACACGTGCAATACCATGAGAAGAATGAATGT
TTGAAAGGATCCAAAGGGAGAGTATGCCTGCTGCTGCTACCCACCCCTCT
TGCCCATCCCCTGGGAGCCACGAGGCCCCGCTGGTCCCAGTGGCCTATAG
TACAACCCTTTCTCCACTCTACCATGAAGTGCAGATAAGTGCTTCAGCCA
GCTGTGTTTTGAGATCTGTGCTATGAACCTTCCCCTGTGTCTCAAACTCT
GCCCCTTTGCTTGCCTGCCAGCCCAATATACAGACGGGAAGACAGGATCT
CAAAAGAAGCAAAGAACCAGGATCATATGCTAGGTTCCCTGGTGTAATCC
CAAAAGCAATTATGTCCCGTGCCCCTCCTCCACCCATGCCTTATGACTTT
CCGGAGCCAAAAGAACAATCCTCCTTACTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_e17.g1 MSMg01no503_e17.g1 CHROMAT_FILE:
MSMg01no503_e17.g1 PHD_FILE: MSMg01no503_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:32 2005
         (555 letters)



>mm_chr14_79639224_79640177
          Length = 954

 Score =  988 bits (511), Expect = 0.0
 Identities = 544/555 (98%), Gaps = 1/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgctgtgcgtgcgtgcgggtgacatgtgccagcctgagacatggggagttgaatgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgctgtgcgtgcgtgcgggtgacatgtgccagcctgagacatggggagttgaatgggt 260

                                                                       
Query: 61  gtcaggtggtttccgaaagtgtcaggtaggcatcccatcggaatccagaggagagagtca 120
           ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gtcagatggtttccgaaagtgtcaggtaggcgtcccatcggaatccagaggagagagtca 320

                                                                       
Query: 121 tcacttgaacgtgtttgttaaacaagtaagagtaggaaaaagatgccccaataaacaaaa 180
           |||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct: 321 tcacttgaacgtgtttgttaaacaagtaagagtagg-agaagatgccccaaaaaacaaaa 379

                                                                       
Query: 181 cagaacagtaaaatgataaaacaaaaatgtaaaaccctgcaaagtctagcctatgaaaca 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagaacagtaaaataataaaacaaaaatgtaaaaccctgcaaagtctagcctatgaaaca 439

                                                                       
Query: 241 cgtgcaataccatgagaagaatgaatgtttgaaaggatccaaagggagagtatgcctgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cgtgcaataccatgagaagaatgaatgtttgaaaggatccaaagggagagtatgcctgct 499

                                                                       
Query: 301 gctgctacccacccctcttgcccatcccctgggagccacgaggccccgctggtcccagtg 360
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 500 gctgctacccacccctcttgcccatcccctgggagccacaaggcccagctggtcccagtg 559

                                                                       
Query: 361 gcctatagtacaaccctttctccactctaccatgaagtgcagataagtgcttcagccagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcctatagtacaaccctttctccactctaccatgaagtgcagataagtgcttcagccagc 619

                                                                       
Query: 421 tgtgttttgagatctgtgctatgaaccttcccctgtgtctcaaactctgcccctttgctt 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtgttttgagatctgtgctacgaaccttcccctgtgtctcaaactctgcccctttgctt 679

                                                                       
Query: 481 gcctgccagcccaatatacagacgggaagacaggatctcaaaagaagcaaagaaccagga 540
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 680 gcctgccagcccaatgtacagacgggaagacaggatctcaaaagcagcaaagaaccagga 739

                          
Query: 541 tcatatgctaggttc 555
           |||||||||||||||
Sbjct: 740 tcatatgctaggttc 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 954
Length adjustment: 10
Effective length of query: 545
Effective length of database: 944
Effective search space:   514480
Effective search space used:   514480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)