BAC Information

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BAC

Clone NameMSMg01-503G07
Chromosome14 (Build37)
Map Location 64,808,323 - 64,808,433
singlet/doubletsinglet
Overlap geneMsra
Upstream geneNeil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik
Downstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503G07.T7 (MSMg01no503_g07.b1)MSMg01-503G07.TJ (MSMg01no503_g07.g1)
ACCAG578520AG578521
length816740
length of high quality
(start - end)
129 (83 - 211)110 (79 - 188)
definitionCHROMAT_FILE: MSMg01no503_g07.b1 PHD_FILE: MSMg01no503_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:39 2005CHROMAT_FILE: MSMg01no503_g07.g1 PHD_FILE: MSMg01no503_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTCTTATCCTATATTTGCGGCGCTAAACGACTCACATATTCCGAGC
TGCGCGGAATTCCTTGTTTTACTTATAATGAAGACTGGATTCCCTTGTGG
TTACAAAATGGTTGTTGGAGCTCCAGCTGTTACCTGTATTTTCCAGGTAT
CTGGAAGGAGCAAGGCACAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAG
GAGGAGGAGGAGGTCTCCCTTCCTTTTTTCTCTCCTTTTCTTTTGCCCTC
CCTTTTTTTTTCTTTTTTTTTCCCTTTTCTCCTTTCTCTTTTCCCCCTTT
CCCCCCCCCCCCCCCCCCGTTTTTTCCTCTTTTTACCACCCCCCACCCGC
GCGAGAACACCCCCGCGACCCGCTTTTTCCCTCCCCTCTTGTTTTTTCTC
TTTCTTCTCCCTCCACTTTTTCTTCTCTCTTTCTTCCCCTCCTTTTCTTC
TCTTCTTTTCCTTCTCTTCCCCCATTTTTTTTTTTTTTCCCTTCTTTCCT
CCCCCCTCTCCCTTTTTTTCTCCCCTTTCCTTTCTTTCTTTTTCCCTTTT
TTTTTCTCCCATCCCCCCCATTTTCCTTTTCCCCCCCCTTTTTTTTTTTT
TTCCATTTTCCCCCCCCCCTCCTCCCCCCCCCCTTTTCTCCCTTTTTTTT
CCCCTTTTTCCCCCCCCCCTTTTCTCTTTTTTTCCCCTTCTGTTTTTCCT
TTTTTTTTTCTTTCCGCTTTTTTTTTTTTCCCCCCTTTTTTTCCCCTTTT
TATCCATTTTTTTTTCCTTTTCTCTCTCTCTTCTTTTTTCCTCTTCTTTT
TCTCCCTTTTCCTCTN
TTTTTGTTTTCAATATATGTGTAGGCCCGGCGGCCGCCTGTCTGCATAAT
TGAGGTGAACTATAGAATTTCCGCGAAATTCATTTCTCCACTGCTCAATA
AAATGCCAGGGTGGCCTCCTGTCCACATGGGCCTGCAATGTCAGTGTTAG
TATGTAGGCCAAAAATATTGGAATTTGTTCAAATTCAGGGAAAGATTCTC
ACGAGGATAACATGAGGATTATTGGAACAGGACACCTGATATCATCTTCT
GGCCTCCACATGAATACTTGGGAACACAAACTTTTCATTTCTATCCCCCC
CCACCACTTTTTTTGTCATCCTTATTCCTGGTGGAATTATCTATTAAAAC
TTGAAATAATTTGCCTTTTCCAAACCCCTTGGCTTACTGGAATTGGTTTT
CCCCCGGGGCTTTTTCCACTTTTTTGGGTGGTATTCGTCTTTCAATCCTC
CCCCCCGGTTATGGAAAAATCACCCTCCCTTCTTTCGCTTTGGCCCCTCC
CCCCTCTCTTATTCCACCACCCACCCTTTTCCCTCCTTTTTCTTTTTCTC
TTTCCTTCCACACCATTTCCTTTTTTCCCCATTCCTTGCTCCTTTCCTCT
TCCCCCTTTTCCCCTCCCATTTTTTTTTTTTCTTTTCCCGTTTTTTCCCC
TCTCCCCCTCCCTTTTTTTTCACCCTTATCTTTTTCTGCATATTACTTTT
CTTCCCTCTTCTCCTCCCTCACCTCTTTCTTTTCACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_g07.g1 MSMg01no503_g07.g1 CHROMAT_FILE:
MSMg01no503_g07.g1 PHD_FILE: MSMg01no503_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:39 2005
         (110 letters)



>mm_chr14_64808123_64808633
          Length = 511

 Score =  207 bits (107), Expect = 2e-58
 Identities = 110/111 (99%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatttctccactgctca-ataaaatgccagggtggcctcctgtccacatgggcctgca 59
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttcatttctccactgctcacataaaatgccagggtggcctcctgtccacatgggcctgca 252

                                                              
Query: 60  atgtcagtgttagtatgtaggccaaaaatattggaatttgttcaaattcag 110
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atgtcagtgttagtatgtaggccaaaaatattggaatttgttcaaattcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 511
Length adjustment: 8
Effective length of query: 102
Effective length of database: 503
Effective search space:    51306
Effective search space used:    51306
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)