BAC Information

Click to search

BAC

Clone NameMSMg01-503G12
Chromosome14 (Build37)
Map Location 87,953,529 - 87,954,020
singlet/doubletsinglet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503G12.T7 (MSMg01no503_g12.b1)MSMg01-503G12.TJ (MSMg01no503_g12.g1)
ACCAG578530AG578531
length709714
length of high quality
(start - end)
556 (84 - 639)191 (135 - 325)
definitionCHROMAT_FILE: MSMg01no503_g12.b1 PHD_FILE: MSMg01no503_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:40 2005CHROMAT_FILE: MSMg01no503_g12.g1 PHD_FILE: MSMg01no503_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCTATTTACTTATAATTGCGGGCGCTATACGAATCACTATTTTCCAA
ACATCCGCGGAATTCTCAACTTTCCGAAAATGACCAGAAGTCAATAGAAA
TAACAACTAGGCAATGAAATGATTATGATTATCATTAGTCATTAAGAAAA
TGCAAACTGACAGCATAAAGTGATTACTACCACACACCTCTTAATATGAT
CACGTTTGAAAACATCTGTCCTCACAGGAGAAGATGACATTGGACCTTGA
ATGAACTTAGTGGGAATGTGAAGCACACTGGCCCTGCTCAGCTCACATTT
AGGCAGTCATGGTAGTGAGACTTCTTGGATGCAGCTTCGGACATTCCAGT
TTCCAGCGTTACCTGGGTTACCTCTCAGTACTCCATTGTCTCGGATTTTT
CTCCAGGCAGCAATCTGGACCAATTTGTGGCCCATCTGGTTTCTATCTTC
TAAGAGATTACTGTGTCCTTGCCTGGTGCCTATGATCTTGAGTGCAACAT
TTCATACATTTTAACTATTTCAGATGAAGAAGTTAGCTCCTGCCCCCATG
GCTCTCTTCTAAGCATAAGCGCAATTCCTACAAACACATAGACTTGCACA
AGCTGCATTTCTTTTGTGGTGAATGAGCCCCCTGAAGTTAGAATGCATCA
TTTCAGTCCTTTAAATTCTGTTCTTTGCTTACAAAATCCAAGCCATTTAA
CAACCTGAG
TTTTATCTACACAATGATAGGNGTAGGGCTGGNGGNCGCCTGTCCTACAA
CAAAGAGGNGACCTATAGAATGTAACAACAAAAGCCTGGACAAGGAACGA
AGGAATGGGAGAAGGAGAAGCCACCATAAGACAGTGCATAGGACAGACCA
AGCAGAGAAAGTGCAAGAGGGTAATATGGCAGAAATGTAGGTGCAAGAGG
AAGGCGGCCCTAAAGGGGCTGTCCAACAGGGCCCAGGGCAGCAAGGACCC
AAGAGATATTTACCAAGTGTTAACTCAGGAAGGAATATCAGAGAGGAGAG
TATGCTAGCCGCAAGGAGGTTTATTATTTTTTTTTTCCATTGCGATGCTT
AGTGCATATTAAAAATAAGCTGGCATAAGTATGTCTTTCATTCACCACTT
GGGCAGGTGTATAGGAGGTGCGCACACCCTAGGGAAGCATAGAGCGGGTT
TAATTATTTACTGCAACAGCTGAGCCATATCTCCTGACTTTAAATGAATA
ATATACACAACCACCAAGTTAGAGGGAATAAAAACCCAAAAGTACTTATA
CTATGAGAGAAAACAAACAAATTAACAAACAACTATCACTAATTATCTAA
TAATTCCACACTTGAAGAAAAACTTAATAAAAATAAATATGGACTAAAGC
TTAATTTAAATTTAATCCTAAGGCGTTTAACTGAAGACCTGAGAGTTCTA
TATCTGTTCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_g12.b1 MSMg01no503_g12.b1 CHROMAT_FILE:
MSMg01no503_g12.b1 PHD_FILE: MSMg01no503_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:40 2005
         (556 letters)



>mm_chr14_87953065_87954020
          Length = 956

 Score =  936 bits (484), Expect = 0.0
 Identities = 490/492 (99%)
 Strand = Plus / Minus

                                                                       
Query: 65  aaatgcaaactgacagcataaagtgattactaccacacacctcttaatatgatcacgttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 aaatgcaaactgacagcataaagtgattactaccacacacctcttaatatgatcacgttt 897

                                                                       
Query: 125 gaaaacatctgtcctcacaggagaagatgacattggaccttgaatgaacttagtgggaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gaaaacatctgtcctcacaggagaagatgacattggaccttgaatgaacttagtgggaat 837

                                                                       
Query: 185 gtgaagcacactggccctgctcagctcacatttaggcagtcatggtagtgagacttcttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 836 gtgaagcacactggccctgctcagctcacatttaggcagtcatggtagtgagactccgtg 777

                                                                       
Query: 245 gatgcagcttcggacattccagtttccagcgttacctgggttacctctcagtactccatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gatgcagcttcggacattccagtttccagcgttacctgggttacctctcagtactccatt 717

                                                                       
Query: 305 gtctcggatttttctccaggcagcaatctggaccaatttgtggcccatctggtttctatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gtctcggatttttctccaggcagcaatctggaccaatttgtggcccatctggtttctatc 657

                                                                       
Query: 365 ttctaagagattactgtgtccttgcctggtgcctatgatcttgagtgcaacatttcatac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttctaagagattactgtgtccttgcctggtgcctatgatcttgagtgcaacatttcatac 597

                                                                       
Query: 425 attttaactatttcagatgaagaagttagctcctgcccccatggctctcttctaagcata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 attttaactatttcagatgaagaagttagctcctgcccccatggctctcttctaagcata 537

                                                                       
Query: 485 agcgcaattcctacaaacacatagacttgcacaagctgcatttcttttgtggtgaatgag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agcgcaattcctacaaacacatagacttgcacaagctgcatttcttttgtggtgaatgag 477

                       
Query: 545 ccccctgaagtt 556
           ||||||||||||
Sbjct: 476 ccccctgaagtt 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)