BAC Information

Click to search

BAC

Clone NameMSMg01-503H02
Chromosome14 (Build37)
Map Location 115,839,083 - 115,839,527
singlet/doubletsinglet
Overlap geneGpc5
Upstream geneLOC100043521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503H02.T7 (MSMg01no503_h02.b1)MSMg01-503H02.TJ (MSMg01no503_h02.g1)
ACCAG578558AG578559
length698692
length of high quality
(start - end)
426 (78 - 503)446 (75 - 520)
definitionCHROMAT_FILE: MSMg01no503_h02.b1 PHD_FILE: MSMg01no503_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:43 2005CHROMAT_FILE: MSMg01no503_h02.g1 PHD_FILE: MSMg01no503_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTTTCTTCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCAACTGATCTCCACTCACTGAACTATCCTCCAC
CCGACTTACTTTTCAATGCTCTAATGTAGCCTCTCTTCCCTGTCTGCTCT
CATGAGCATTGAACATATCCTATCTCTCACTCATTTTGTCAAATCTTTCT
CTGATTCATCATTTTGTCTGTCTCTCAATTAGATGTCACTTTCCAACATG
GCTGCTTCCTTCTACAAACCAACTTTACCTTCACTGTTGTGGATTCAAGG
TGTGTACTAATGGTGTGTGTATATTCCAGCCACATGGATTAAAGATTTGT
CATTTCACCTGGATCACACAGATTTAGAAAGCCTTCGGATGTGGCCCCTT
TCCAGAGGAACCATATTGCTGGATTACAAATCCTCTACATAAATAGTTTA
ATCTGGAAATCACATTTAATTATTAATATACGGAGCTTAGGGGAGTCTAA
CAGAAAATCGATTGAAATATTACCAGGACAGATATTGGTCGGTCACTTCC
ACAAACTTTGTGTCACTCATTGCACTAGTATATCTTGCACGTAGGACATT
ATTGTAGACCCAAGTTTTGTGGGTAGGTTTCCATCCTGGTCAGCTTCATG
TTAATTTGATAGAAGCTAGAACCATCTGAAATGACGAAGCCTCAATTG
CAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAAAA
ACCCTGTCTCAAAAAAACAAAACAAAACAAAACAAAATAAACAAACAAAT
AAAAACAAAACCAAAAAACCAAAACAACAACAAAAAAAAGAAAAGTAACT
CAGTTGATGATAAATGACTTTGAATCACTGATTCATCACAAAGTCTCCAC
CCATATATACCGAGGCCTTTGTGTTCAATGAACATCCAAATTGCCAGGAA
CTTGGGTGTGCCTAGTAAAAGGTATGAAGCAGGGGTGTAGTCTGCCTCTG
TCTGCTGTAGCCTGACCCTTTTCCCAGATAACCCTTCATCATTTTTACCA
CTCTTGAGTTCTCTCCCTCAGTTACTTCCTGCTTTCTTTTCTATTAACTG
ACCAGAAACAAGCAAGTATTTCTCTGAATCCCTTAATGTATTCTAGCTAG
CAAGAGATCAAAGCAGAGAAGGAGACTATAAACCTCTCCAAATTTTAGCT
CTATCTCACACATGCTGTATGGAACTTGCGAACCTACAATTTTGCGAATG
ACATCTGAAGTAACACTTGTTCTATGGAGCAGGCCTCTCTACGTGTGGAC
TCTGTACTCATGCTGATTTATGTCAGGCTGAGCTGAATTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_h02.g1 MSMg01no503_h02.g1 CHROMAT_FILE:
MSMg01no503_h02.g1 PHD_FILE: MSMg01no503_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:43 2005
         (446 letters)



>mm_chr14_115838763_115839607
          Length = 845

 Score =  754 bits (390), Expect = 0.0
 Identities = 432/446 (96%), Gaps = 1/446 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctacacagaaaaaccctgtctcaaaaaaacaaaacaaaacaaaaca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 765 caggacagccagggctacacagaaaaaccctgtctcaacaaaacaaaacaaaacaaaaca 706

                                                                       
Query: 61  aaataaacaaacaaataaaaacaaaaccaaaaaaccaaaacaacaacaaaaaaaagaaaa 120
           ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 705 aaataaacaaacaaacaaaaacaaaaacaaaaaacaaaaacaacaacaaaaaaaagaaaa 646

                                                                       
Query: 121 gtaactcagttgatgataaatgactttgaatcactgattcatcacaaagtctccacccat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gtaactcaattgatgataaatgactttgaatcactgattcatcacaaagtctccacccat 586

                                                                       
Query: 181 atataccgaggcctttgtgttcaatgaacatccaaattgccaggaacttgggtgtgccta 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 585 atataccgaggcctttgtgttcagtgaacatccaaattgccaggaacttgggtgtgccta 526

                                                                       
Query: 241 gtaaaaggtatgaagcaggggtgtagtctgcctctgtctgctgtagcctgacccttttcc 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 g-aaaaggtatgaagcaggggtgtagtctgcctctgtctgctgtagcctgacccttttcc 467

                                                                       
Query: 301 cagataacccttcatcatttttaccactcttgagttctctccctcagttacttcctgctt 360
           ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct: 466 cagataacccttcatcattttcaccactcttgagttgtctccctcagttacatcctggtt 407

                                                                       
Query: 361 tcttttctattaactgaccagaaacaagcaagtatttctctgaatcccttaatgtattct 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 406 tcttttctattaactgaccagaaacaagcaagtatttctctgaatcccttaaggtattct 347

                                     
Query: 421 agctagcaagagatcaaagcagagaa 446
           |||||||||| || ||||||||||||
Sbjct: 346 agctagcaagtgaccaaagcagagaa 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 845
Length adjustment: 10
Effective length of query: 436
Effective length of database: 835
Effective search space:   364060
Effective search space used:   364060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)