Query= MSMg01no503_k01.b1 MSMg01no503_k01.b1 CHROMAT_FILE:
MSMg01no503_k01.b1 PHD_FILE: MSMg01no503_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:58 2005
(182 letters)
>mm_chr14_74431868_74432449
Length = 582
Score = 304 bits (157), Expect = 3e-87
Identities = 173/181 (95%), Gaps = 6/181 (3%)
Strand = Plus / Minus
Query: 5 gaattcatgtccattttcc---aaacattaaactgactcagtaatttgtaattatatatc 61
||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaattcatgtcca---tacaagaaacattaaactgactcagtaatttgtaattatatata 345
Query: 62 tatgcatatatatgtgacaataataattaagcaaacaaacgagatcataggtctgagagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tatgcatatatatgtgacaataataattaagcaaacaaacgagatcataggtctgagagg 285
Query: 122 gaaaagagggttgtggtggagggtaagacagatataggagggggaagggttagagtgagg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gaaaagagggttgtggtggagggtaagacagatataggagggggaagggttagagtgagg 225
Query: 182 a 182
|
Sbjct: 224 a 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space: 99876
Effective search space used: 99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no503_k01.g1 MSMg01no503_k01.g1 CHROMAT_FILE:
MSMg01no503_k01.g1 PHD_FILE: MSMg01no503_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:58 2005
(275 letters)
>mm_chr14_74282603_74283291
Length = 689
Score = 445 bits (230), Expect = e-129
Identities = 273/288 (94%), Gaps = 14/288 (4%)
Strand = Plus / Plus
Query: 2 tgaaatga-atgcacagttat-attttaataac--tta-cacatcattactgtacaga-t 55
|||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||||| |
Sbjct: 202 tgaaatgatatgcacagttataattttaataaccattaccacatcattactgtacagact 261
Query: 56 gtttcaatttgcatttttaccagtaagg-agcagtttacatttttggcttaccaatttct 114
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 262 gtttcaatttgcatttttaccagtaaggtagcagtttacatttttggcttaccaatttct 321
Query: 115 gttcccaaaatg-caaaaccctgccagtctgatgaatcagaaaacaaagc-aaata-ttt 171
|| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 322 gtccccaaaatgtcaaaaccctgccagtctgatgaatcagaaaacaaagcaaaatagttt 381
Query: 172 taattt-tattatgaatgtga-taaaga-agttattatgctttaaaccattttg-aactc 227
|||||| |||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct: 382 taatttctattatgaatgtgattaaagatagttattatgctttaaaccattttgtaactc 441
Query: 228 actttgtaacatgcatttgagtttcctgttttgttttctaaatcaatc 275
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actttgtaacatgcatttgagtttcctgttttgttttctaaatcaatc 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 689
Length adjustment: 9
Effective length of query: 266
Effective length of database: 680
Effective search space: 180880
Effective search space used: 180880
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
