BAC Information

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BAC

Clone NameMSMg01-503O20
Chromosome14 (Build37)
Map Location 65,106,985 - 65,107,490
singlet/doubletsinglet
Overlap genenone
Upstream geneTdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
Downstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503O20.T7 (MSMg01no503_o20.b1)MSMg01-503O20.TJ (MSMg01no503_o20.g1)
ACCAG578928AG578929
length727734
length of high quality
(start - end)
507 (82 - 588)483 (85 - 567)
definitionCHROMAT_FILE: MSMg01no503_o20.b1 PHD_FILE: MSMg01no503_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:21 2005CHROMAT_FILE: MSMg01no503_o20.g1 PHD_FILE: MSMg01no503_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTTATATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCG
AGGATCCGCGGAATTCCTGACTCTCTCCTGACAAGTGACTTTATCAAGAC
TTCAGTCTGAGTAAAGAGTGAGGAGCATCTTTCTCTAGCCAAGCTCCCTT
TATTCTCTCTGTCTCTTTATCCAGGTTCATGGTGACTGGAGAGTAGGCAG
GAGGACAGGAAGGAATGTGGGGACCCAGGATGCTGGCCACATTCCCGTCC
TTTGGTCACTGGGACTTGGAGTGGGTGCAATCTTTGTGAGATTTCACTAA
GCCGAGCTCTTTCGAAGGCTGGGCTCCCTTATAGATCACATCTCAACAGT
CTTGCTAAAATGCCATCAGAGTGCCTGCCGGTTCAAAGCTTTCCTATCAC
TGATGATAACTGAGTCCCAGTGTTTCTGAGTTCCACAAAACAAGACAGAA
ACAATAGCTCTCTGTACAAGTGCCAGCACTCAGTATGAGAACCCAGATTC
TGTTCCTAGCACCCATGTTGGGAGGCTTACAATCTTCTGTGACTCCAGCT
CCAAGGGATCCAACATCTCTGTGCAGAGAGCACCTGCTCTTACAGGCACA
CACCCATATGCAGGTGTATATAAATTTAAACTGGACAGGTGGCTAGGAAA
GTGAGAACATGGCTGCTTGTCTAAACGACCTGGCTTTCCTTCCCTGCACC
CATACAGTGGCTTCCAACAACTGTAAC
TTTTTTTTTACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTTAAAACTACA
TTGTGGATCTAGAGAGATGGCTCAATGGTTAAGAGCACTGGCTGCTCTTC
CGGGAGCTGGGTTTGATTCCTAGCATCTATATGATCACTCATAACCGTCT
AAAGTCCAATTTCAGGGGCTTCAACTCCCTCTTCTGGCCTCAGTGAGCAC
TGCATATACTTGATACACAAACATGCAGATAAAACACCCATATACATTAA
ATAAAAAGAAAATGTTTTACCCAAGGAGCTGAAGGGGTCTGCAGCCCTAT
AGAAGGAGCAACAATATGAACTAACCAGTACCCCCAGAGCTCCCTGGGAC
TAAACCACCAATCAAAGAAAACACATGGTAGGACTCGTGTCTCTAGCTGC
ATATATAATAGAGGATGGCCTAGTTGGCCATCAGTGGGAGGAGAGGCCCT
GGTCTTTCGAAAATTCTATGCCCCAGTATAGGGGAATGCCAGGGACAGGA
AGTGGGAGTGGGTGGGTTGGGGAGCACGGGGATTTTTCCCCCCTCTTCTT
CCTTTTTTCCTTTTTCCCCCTTCTCCTCTTTCTTTTTCTTCTCCTTTTCC
CGCTTTTCTTTTTTTTTCCTTTTGTCCCCCCTCCTGCGGCATTAGATTGT
CCTAAGGGTTGACTATTTGTAGGTTTGTTCTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_o20.b1 MSMg01no503_o20.b1 CHROMAT_FILE:
MSMg01no503_o20.b1 PHD_FILE: MSMg01no503_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:21 2005
         (507 letters)



>mm_chr14_65106785_65107691
          Length = 907

 Score =  940 bits (486), Expect = 0.0
 Identities = 501/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtgactttatcaagacttcagtctgagtaaagagtgaggagcatctttctctagcca 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtgactttatcaagacttcagcctgagtaaagagtgaggagcatctttctctagcca 260

                                                                       
Query: 61  agctccctttattctctctgtctctttatccaggttcatggtgactggagagtaggcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctccctttattctctctgtctctttatccaggttcatggtgactggagagtaggcagg 320

                                                                       
Query: 121 aggacaggaaggaatgtggggacccaggatgctggccacattcccgtcctttggtcactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacaggaaggaatgtggggacccaggatgctggccacattcccgtcctttggtcactg 380

                                                                       
Query: 181 ggacttggagtgggtgcaatctttgtgagatttcactaagccgagctctttcgaaggctg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacttggagtgggtgcaatctttgtgagatttcactaagccgagctctttcgaaggctg 440

                                                                       
Query: 241 ggctcccttatagatcacatctcaacagtcttgctaaaatgccatcagagtgcctgccgg 300
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctcccatgtagatcacatctcaacagtcttgctaaaatgccatcagagtgcctgccgg 500

                                                                       
Query: 301 ttcaaagctttcctatcactgatgataactgagtcccagtgtttctgagttccacaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaaagctttcctatcactgatgataactgagtcccagtgtttctgagttccacaaaac 560

                                                                       
Query: 361 aagacagaaacaatagctctctgtacaagtgccagcactcagtatgagaacccagattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagacagaaacaatagctctctgtacaagtgccagcactcagtatgagaacccagattct 620

                                                                       
Query: 421 gttcctagcacccatgttgggaggcttacaatcttctgtgactccagctccaagggatcc 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 gttcctagcacccatgttgggaggcttacaatcttctgtaactccagctccaagggatcc 680

                                     
Query: 481 aacatctctgtgcagagagcacctgc 506
           ||||||||||||||||||||||||||
Sbjct: 681 aacatctctgtgcagagagcacctgc 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)