Query= MSMg01no504_f13.b1 MSMg01no504_f13.b1 CHROMAT_FILE:
MSMg01no504_f13.b1 PHD_FILE: MSMg01no504_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:55 2005
(675 letters)
>mm_chr14_40118606_40119680
Length = 1075
Score = 1212 bits (627), Expect = 0.0
Identities = 663/679 (97%), Gaps = 8/679 (1%)
Strand = Plus / Minus
Query: 1 tagaattgtaagtagaatattttgaataagaattaaataatagaatacaagctttcatgc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tagaattataagtagaatattttgaataagaattaaataatagaatacaagctttcatgc 816
Query: 61 aaacataatatttgtgaagtattttactaaaagattttcccctttgagaacttaaatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aaacataatatttgtgaagtattttactaaaagattttcccctttgagaacttaaatttt 756
Query: 121 tgctatttagtttattctatgatgtaattgttagatatgtagatagtttgttgcttgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgctatttagtttattctatgatgtaattgttagatatgtagatagtttgttgcttgatt 696
Query: 181 atttaaaatgtgtgagaatctccagaattctcaatggtctccaggaaataaatgatgtca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 695 atttaaaatgtgtgagaatctccagaattctcaatggtctccaggaaataaatggtgtca 636
Query: 241 tt----ttatttttattaggactctgagattttcaaacccagaattattaacagaaagaa 296
|| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttaaaataa----cattaggactctgagattttcaaacccagaattattaacagaaagaa 580
Query: 297 gcatagcagaacatcttaatgattcctttaatgcttaattcaagtgttgtatgatggttc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gcatagcagaacatcttaatgattcctttaatgcttaattcaagtgttgtatgatggttc 520
Query: 357 ttctggaaaattttacactctgttgattgtacctgagggagaaggaatataataagcaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttctggaaaattttacactctgttgattgtacctgagggagaaggaatataataagcaaa 460
Query: 417 ggtggtttctaaacttgtgtgttttcttaaatttaaatgtttctatttcttatcttattc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggtggtttctaaacttgtgtgttttcttaaatttaaatgtttctatttcttatcttattc 400
Query: 477 aaatattattcaactcagagtgaaatctctaaggaaatgaaggatgatggcctttttgtg 536
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 399 aaatattattcaactcagagtgaaatctctaaggaaatgaaagatgatggcctttttgtg 340
Query: 537 ctttggatagtgcagactcataaaaacatgctttagccgtaaatctctttatcttcaggg 596
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 339 ctttggatagtgcagactcataaaaacatgctttagccgtaaatatctttatcttcaggg 280
Query: 597 ctgtccttttgggttagaagagcatagtgctattcttacctcgtagtaaccatcatttct 656
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 279 ctgtccttttgggttagaagagcatactgctattcttacctcatagtaaccatcatttct 220
Query: 657 cacatagttcattttgttg 675
|||||||||||||||||||
Sbjct: 219 cacatagttcattttgttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_f13.g1 MSMg01no504_f13.g1 CHROMAT_FILE:
MSMg01no504_f13.g1 PHD_FILE: MSMg01no504_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:56 2005
(565 letters)
>mm_chr14_39944194_39945158
Length = 965
Score = 1062 bits (549), Expect = 0.0
Identities = 561/565 (99%)
Strand = Plus / Plus
Query: 1 ccagggctagggagatggctcaacagataataataagcactgactgttcttccagaggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagggctagggagatggctcaacagataataataagcactgactgttcttccagaggtc 260
Query: 61 ctgagttcaaatcccagcaaccacatggtggttcccaaccatctgtaatgagatctgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagttcaaatcccagcaaccacatggtggttcccaaccatctgtaatgagatctgatg 320
Query: 121 ccttcttctggtgtgtctgaagacggctcccgtgtactcatatacataagaaaaataaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttcttctggtgtgtctgaagacggctcccgtgtactcatatacataagaaaaataaat 380
Query: 181 aaatctaaaaaacaccccccaaaacaaaaaaccacaaaaacgaattctagcctttttcaa 240
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 aaatctaaacaacaccccccaaaacaaaaaaacacaaaaacgaattctagcctttttcaa 440
Query: 241 gatagaggaaccaagttaggtgtgggattaatttagagtataatagacagaagccattag 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagaggaaccaagttaggtgtgggattaatttagagtataatagacagaagccattag 500
Query: 301 catgtcagtttaaggagcctgataagagaagagacaacaggaaaaaatgacaattttatt 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 catgtcagtttaaggagcctgataacagaagagacaacaggaaaaaatgacaattttatt 560
Query: 361 accatcaaatgatgtaataagtccacaaagaccaagcaatatgtgagagtgcacaggcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accatcaaatgatgtaataagtccacaaagaccaagcaatatgtgagagtgcacaggcag 620
Query: 421 aaatgaacacggacttcttcacaagaaatacaacaacatatttgtcaatcgaaagtgtcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatgaacacggacttcttcacaagaaatacaacaacatatttgtcaatcgaaagtgtcc 680
Query: 481 tagcaatgtgctttaaagtttttctagttatagtaatatcagctaacagttcccatatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagcaatgtgctttaaagtttttctagttatagtaatatcagctaacagttcccatatct 740
Query: 541 tcagtttatatggacctgcccttgt 565
|||||||||||||||||||||||||
Sbjct: 741 tcagtttatatggacctgcccttgt 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
