BAC Information

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BAC

Clone NameMSMg01-504L11
Chromosome14 (Build37)
Map Location 52,853,907 - 52,854,600
singlet/doubletsinglet
Overlap geneChd8
Upstream geneEar11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h
Downstream geneRab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504L11.T7 (MSMg01no504_l11.b1)MSMg01-504L11.TJ (MSMg01no504_l11.g1)
ACCAG579528AG579529
length7491,337
length of high quality
(start - end)		699 (48 - 746)---
definitionCHROMAT_FILE: MSMg01no504_l11.b1 PHD_FILE: MSMg01no504_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:24 2005CHROMAT_FILE: MSMg01no504_l11.g1 PHD_FILE: MSMg01no504_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCAAGGATTTCTGAGGCTACACAGAAAAACACTGTCTGAAACAA
AACAGAACAGAACAGAAGAGAATAAAATAAAACAAAACAAAAAGATACGT
TCTCCCTATATAGTACTAATTGGCCTAGAGCATAATAGGTAGACCAGGCT
GGCCTTCAACTTTCAGAGATCAACCTGTCTCTGCCTTCTAGGTGCTGGGA
TTAAAGGTGTGACTCACCACACTTAAGACAGTCTCTCTCACTGCACTGGG
GTTTACTGATTTGGCTAGATTACCTGACCAGAAAGCCCTAGGGACCCTCC
TGTCTCTAACTCCTTAGTCATCACAGGCTGTTCACACCAGTGGTTGAGAT
CCAAACTTATTCATTCTGTACAGAATGCATTTTATCCAAGTGAATCATCA
ACTGTGTCTAGAGGTAATTTCAAATCATCTTTCTTCTTAAATTTTTACCT
ATTTACTTATTTTGGACAGAGTCTATCTATTATGAAGCTCTGGCTGTCCT
GGAACTCACTTTGTCAATCAGACTGGCCTAAACTCAGAGATGCACCTGCC
TATGCCTCCCCACTGAGGGCTAAGATTAAGGGCAAGGGCTCGCCATGCTT
GCCTCTTTCTTTCTTGAGGAAACAGTCTTGCTATAGAATACAGCTCAGGC
TCAGGCTCCCTACCTGACCCCCACAATATCATAATAAAGAAAAGACAAN

NAACGTATTGACTANNGTGGGGTAGTTTGCCTGGNGCGNGCTCNNGCCNG
GNGTACGANCACNACGATGATAGGNGNNGNNACACNTANTANGNNAAGGT
ANNCCACGCAGAGCAAGTGTGCGAAGCATNCTNTGGGTTNNTCNNGAAGG
GTNNNAAACANGNGNATGGNGNGTGGNGNGTGGNGGNTATGTGGNGNAAA
GCACTCTCNTNCTATANGAAAGGNNCAGGTNAAGATGNNGGGNGGAATGG
NGTNNATATGGTGTATATNTTNCTTNGNAGAAGNNGGNAGNACCNTGGNG
NAANANNGGGGNAANNNAACATTNTNGNNAAATGGGTANNAATANAANGA
NANNAATATNNCTCAATGGGAAGATGAGAAAGAAGGNNANANGAANAGAA
NANGAATATGTAATTGTGATANGTANCACGCAAAANNNNNNNAAGNGCGG
TNNNNNNAATGACAGAAAGGAAGGAAAGAAAGCAAAGAAAAATAGTAATG
ATAGAAAGAAAGAAAGCACAGACAGAAAGTAATGTTTTATTTTTATGAAC
CGAACGAACGGAAAGAAAAGAAAGGAAAGAAACGAAACGGACCGAAACGC
AATTTTCTCGAAAGGCGACGGGAAGGGAAACGGAAAACGAAAGGGGACAA
GAGAAATGTAAACCGACATGTGTACATGTATAGGTGGATAGTGTAAATAG
GAAATGTTAACGATGTGCATATNTAAAATCCNNCNNNNTNNNNTTGATGT
TGTCAGCGTAACTGTAAGGGATATGTGCAACTTATAAGTTGGGGTGACAA
GCGCACCCACCCTCCTCNCTTCCGTCTTTTCTCCCACCGTCTTCTCTTCC
NTCTTCGCGCGTTGCGNNNCCGGCAGATGGGCTTGCTCNNCCNCCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTAGCTAGGGA
GNAGNANNTTAGTAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAG
GTTGTAGTGGGGNNCNAGAGGGTGGTNGGGAGTGTGAGAGATGTACANCG
CGNNNNCCCCNNNNNNNNNCNAATATGATGAGGAGATGGTAGTGCTTANT
GTTGCATGNCNNTCNCTNCTNANTATGAAGTGTNCAGTAGCGANTCGTTG
TGTGTGATTTACNAANANNNNNNCAGATGTAGGATAGAAAGTGNCNTCCG
GCTTGTAAGCGAGAGATGATATATCANCGNCNCTACGCGGNCGCAGAGAT
GACATATCNNNNCATGCATAGTGCTNCNTCNCTNAANANNNNNAACAANN
TNCCNNNNTTGCGTTATGCNACNCTGATGCCTATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_l11.b1 MSMg01no504_l11.b1 CHROMAT_FILE:
MSMg01no504_l11.b1 PHD_FILE: MSMg01no504_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:24 2005
         (699 letters)



>mm_chr14_52853702_52854800
          Length = 1099

 Score = 1319 bits (682), Expect = 0.0
 Identities = 691/694 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaaggatttctgaggctacacagaaaaacactgtctgaaacaaaacagaacagaa 65
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaggagagctgaggctacacagaaaaacactgtctgaaacaaaacagaacagaa 265

                                                                       
Query: 66  cagaagagaataaaataaaacaaaacaaaaagatacgttctccctatatagtactaattg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cagaagagaataaaataaaacaaaacaaaaagatacgttctccctatatagtactaattg 325

                                                                       
Query: 126 gcctagagcataataggtagaccaggctggccttcaactttcagagatcaacctgtctct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcctagagcataataggtagaccaggctggccttcaactttcagagatcaacctgtctct 385

                                                                       
Query: 186 gccttctaggtgctgggattaaaggtgtgactcaccacacttaagacagtctctctcact 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gccttctaggtgctgggattaaaggtgtgactcaccacacttaagacagtctctctcact 445

                                                                       
Query: 246 gcactggggtttactgatttggctagattacctgaccagaaagccctagggaccctcctg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcactggggtttactgatttggctagattacctgaccagaaagccctagggaccctcctg 505

                                                                       
Query: 306 tctctaactccttagtcatcacaggctgttcacaccagtggttgagatccaaacttattc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctctaactccttagtcatcacaggctgttcacaccagtggttgagatccaaacttattc 565

                                                                       
Query: 366 attctgtacagaatgcattttatccaagtgaatcatcaactgtgtctagaggtaatttca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 attctgtacagaatgcattttatccaagtgaatcatcaactgtgtctagaggtaatttca 625

                                                                       
Query: 426 aatcatctttcttcttaaatttttacctatttacttattttggacagagtctatctatta 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aatcatctttcttcttaaatttttacctatttacttattttggacagagtctatctatta 685

                                                                       
Query: 486 tgaagctctggctgtcctggaactcactttgtcaatcagactggcctaaactcagagatg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tgaagctctggctgtcctggaactcactttgtcaatcagactggcctaaactcagagatg 745

                                                                       
Query: 546 cacctgcctatgcctccccactgagggctaagattaagggcaagggctcgccatgcttgc 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cacctgcctatgcctccccactgagggctaagattaagggcaagggctcgccatgcttgc 805

                                                                       
Query: 606 ctctttctttcttgaggaaacagtcttgctatagaatacagctcaggctcaggctcccta 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ctctttctttcttgaggaaacagtcttgctatagaatacagctcaggctcaggctcccta 865

                                             
Query: 666 cctgacccccacaatatcataataaagaaaagac 699
           ||||||||||||||||||||||||||||||||||
Sbjct: 866 cctgacccccacaatatcataataaagaaaagac 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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