BAC Information

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BAC

Clone NameMSMg01-504O15
Chromosome14 (Build37)
Map Location 50,207,291 - 50,367,160
singlet/doubletdoublet
Overlap gene3632451O06Rik
Upstream geneOtx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
Downstream geneLOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504O15.T7 (MSMg01no504_o15.b1)MSMg01-504O15.TJ (MSMg01no504_o15.g1)
ACCAG579678AG579679
length784798
length of high quality
(start - end)		638 (47 - 684)572 (80 - 651)
definitionCHROMAT_FILE: MSMg01no504_o15.b1 PHD_FILE: MSMg01no504_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:41 2005CHROMAT_FILE: MSMg01no504_o15.g1 PHD_FILE: MSMg01no504_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,366,783 - 50,367,160)(50,207,291 - 50,207,862)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTGTGTCTTAATATTAATTGATCTGCTGTCTTCAATTCTTTCA
GGAAGGGTATTTATTCCTGGTATGTTTTGTGGTAGGTAGAATAATGGCTT
CCCCAAAAAGTTTATGCATAACCTCCAAAGACTTTAGATATTTTTCCCTT
ATGTGGAAAAGGGAAGTATCCTGAAATGGGAGTTGGGACAATGGTCTGGA
TAACAGTGGCTTCATAGTCATATAGGTAGCATGTTGGAGGCATAATTCAG
ATGATAGAGTGCTTTTTAGTATGAAAAGAAAAGTCCAAAGTTTGATCCCA
GCCGGGAATAAACTGGGCATGTTGGTGCATGCCTACAATCCCAGAACTTT
GGAGGTAAAGGCTGAAGGACCAGAAGTACAAGGTCATCCTAGGTCACATA
GGGAGCTTGAAGCCATCCCGGTATACACAACATCCTGTCTAAGCAACAAC
AGAAAAGGAAAACTCTCAACCCTAAACCAATCAACAAGCAGAGAAAAGAA
ACTCAATGTCAGAGTCAGAAAAGGATCTATGATGTTGGAGGCAAATGTTA
GAGCAGGGTGACCCAGAGCGAAGGAATTCCAGAAACCCCTAGAAGATGGA
GAAGGCAATAAAGTAGATTCACCTGTTGCTCATAGATGAAATGGAGCTTG
CCAACATCGATTTGAGTCCAGTCAAGCCCATTCTAGACCTTTGACCTCTA
AAAGTACAAAGTAATGAGTTTGTGATGTTTTAGC

NNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGTTAGAAACATGATCTC
AGAGTCTCTTCCAGGATTTCTTACTGGCCGCCTTAAGGTAAACATTCATA
CATTGTCAGAGTAACTATCTGGTAGCGTTAATTTAAAATATGTTTGGAAA
CTAAAGTCCAAATAAGCTGAATAAGACAGAGAGAGCTTTCTGTCCACTCA
GTTTTCTCTAAGACTAGAGTCTTACAGAACTGTAGTGCAAGTTCCCAACT
ACAAAATAGACTTTGATAAACTCAAAATAGAGTACATTTCTGTCATTAAA
AAAGGTTTTGACTAATGTCCTTTCATAACCCAACCCACTTCTTCCCTATC
TTTATCTCTTCCTTCACCCATAGGAATCACCACTCTGCTTTCAAGAATGT
AACATGAATGAGATCTTGCGTAGCCCAGTTCTCTAGCTATCCATTCACAT
CTATGGTTGGTTGGTTGCACTGCTGAGTGCCATTCCAAGATTGAAATGAC
TCCCACTTTAAATAACTCATCCTCAGACATGTTAGATCATTTCCAGTTTG
GGTCTGTAAAAAGAAAATGTGCTGTAAACATATGCGAATGGGCTTTTGTG
TAANGTGCATTGTTGTCTCCCTCACATGAGTGCCCTGAATTGAAGCTGCA
TGGCTTTCTGTTCACTGCATGGTTTGTTTTTTAAGACTGTGCCNACTTTA
TATGTTTCTACCAACCAGGTGATCCAGTTTCTCATATCACCCCTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_o15.b1 MSMg01no504_o15.b1 CHROMAT_FILE:
MSMg01no504_o15.b1 PHD_FILE: MSMg01no504_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:41 2005
         (638 letters)



>mm_chr14_50366123_50367160
          Length = 1038

 Score =  731 bits (378), Expect = 0.0
 Identities = 378/378 (100%)
 Strand = Plus / Minus

                                                                        
Query: 261  gagtgctttttagtatgaaaagaaaagtccaaagtttgatcccagccgggaataaactgg 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 gagtgctttttagtatgaaaagaaaagtccaaagtttgatcccagccgggaataaactgg 979

                                                                        
Query: 321  gcatgttggtgcatgcctacaatcccagaactttggaggtaaaggctgaaggaccagaag 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978  gcatgttggtgcatgcctacaatcccagaactttggaggtaaaggctgaaggaccagaag 919

                                                                        
Query: 381  tacaaggtcatcctaggtcacatagggagcttgaagccatcccggtatacacaacatcct 440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918  tacaaggtcatcctaggtcacatagggagcttgaagccatcccggtatacacaacatcct 859

                                                                        
Query: 441  gtctaagcaacaacagaaaaggaaaactctcaaccctaaaccaatcaacaagcagagaaa 500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858  gtctaagcaacaacagaaaaggaaaactctcaaccctaaaccaatcaacaagcagagaaa 799

                                                                        
Query: 501  agaaactcaatgtcagagtcagaaaaggatctatgatgttggaggcaaatgttagagcag 560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798  agaaactcaatgtcagagtcagaaaaggatctatgatgttggaggcaaatgttagagcag 739

                                                                        
Query: 561  ggtgacccagagcgaaggaattccagaaacccctagaagatggagaaggcaataaagtag 620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738  ggtgacccagagcgaaggaattccagaaacccctagaagatggagaaggcaataaagtag 679

                              
Query: 621  attcacctgttgctcata 638
            ||||||||||||||||||
Sbjct: 678  attcacctgttgctcata 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no504_o15.g1 MSMg01no504_o15.g1 CHROMAT_FILE:
MSMg01no504_o15.g1 PHD_FILE: MSMg01no504_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:41 2005
         (572 letters)



>mm_chr14_50207091_50208062
          Length = 972

 Score = 1106 bits (572), Expect = 0.0
 Identities = 572/572 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagggttagaaacatgatctcagagtctcttccaggatttcttactggccgccttaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagggttagaaacatgatctcagagtctcttccaggatttcttactggccgccttaaggt 260

                                                                       
Query: 61  aaacattcatacattgtcagagtaactatctggtagcgttaatttaaaatatgtttggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacattcatacattgtcagagtaactatctggtagcgttaatttaaaatatgtttggaa 320

                                                                       
Query: 121 actaaagtccaaataagctgaataagacagagagagctttctgtccactcagttttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaaagtccaaataagctgaataagacagagagagctttctgtccactcagttttctct 380

                                                                       
Query: 181 aagactagagtcttacagaactgtagtgcaagttcccaactacaaaatagactttgataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagactagagtcttacagaactgtagtgcaagttcccaactacaaaatagactttgataa 440

                                                                       
Query: 241 actcaaaatagagtacatttctgtcattaaaaaaggttttgactaatgtcctttcataac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcaaaatagagtacatttctgtcattaaaaaaggttttgactaatgtcctttcataac 500

                                                                       
Query: 301 ccaacccacttcttccctatctttatctcttccttcacccataggaatcaccactctgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaacccacttcttccctatctttatctcttccttcacccataggaatcaccactctgct 560

                                                                       
Query: 361 ttcaagaatgtaacatgaatgagatcttgcgtagcccagttctctagctatccattcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaagaatgtaacatgaatgagatcttgcgtagcccagttctctagctatccattcaca 620

                                                                       
Query: 421 tctatggttggttggttgcactgctgagtgccattccaagattgaaatgactcccacttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctatggttggttggttgcactgctgagtgccattccaagattgaaatgactcccacttt 680

                                                                       
Query: 481 aaataactcatcctcagacatgttagatcatttccagtttgggtctgtaaaaagaaaatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaataactcatcctcagacatgttagatcatttccagtttgggtctgtaaaaagaaaatg 740

                                           
Query: 541 tgctgtaaacatatgcgaatgggcttttgtgt 572
           ||||||||||||||||||||||||||||||||
Sbjct: 741 tgctgtaaacatatgcgaatgggcttttgtgt 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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