BAC Information

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BAC

Clone NameMSMg01-504P13
Chromosome14 (Build37)
Map Location 70,076,128 - 70,129,609
singlet/doubletdoublet
Overlap geneLoxl2, R3hcc1, Chmp7
Upstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4
Downstream geneTnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504P13.T7 (MSMg01no504_p13.b1)MSMg01-504P13.TJ (MSMg01no504_p13.g1)
ACCAG579722AG579723
length758779
length of high quality
(start - end)		676 (77 - 752)621 (77 - 697)
definitionCHROMAT_FILE: MSMg01no504_p13.b1 PHD_FILE: MSMg01no504_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:46 2005CHROMAT_FILE: MSMg01no504_p13.g1 PHD_FILE: MSMg01no504_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,128,934 - 70,129,609)(70,076,128 - 70,076,748)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGGAGACGAGCCGCGG
AATTCTGAGAATTCTTATTGAGGAATGTGTTTATTATTGCACCTAGGGCC
TTGTGTGCATTGGGCACGTGCTCTGCTGCTGAGCTCTAGCTCAGCCCTTC
TTGCTAAGCTTTGGTTTCTCGCCCTCTGATTACTTTTTCCCCCTCCAACT
TCCCAGTAGCTTGCTTGTCAATGTTCCCTGTCTTTTGCCTGGATGAGACC
AGCAGGCACCATCCCTTCTTTCTTTCCCTGCTGCCCAGTCAGCTTCTTCA
CTTGCTACCTTTGCCTTCTATTCCAGACCCCGTGTTGACTGCAGGGCAAA
TGTGCTCTCAGCGCCATGAAACAGCTCTCCCGTACCACACAGGAGTTGGG
TGGAATTAATGTAGCCACCGGGAACCATAGTCACTTTCTAAAGCAAGCGC
TGTGACCAGTCTACTCGTGTGTCATACATAGAGAAGCAGGCCTAGAGCTC
AGTAGGCACAGTCGTGAGTCTGTGACACTCTGTTACTAAGCAGATACATC
ACGCTCTGCTTGGTGACACCTGATGTCAGGTATGTTGCTGAGTCCTGTTT
TCTCTTGTTGGGTAAAGAAGAAAAGGGAGTTTATAGGGAGGAACATGTCA
AGAACCCTGATTTTCCTAAGGCTAGGCAAAGGAATCGACCAGAGAGAAGA
ANAACAAAACAAAATTGCCCATGATTTAGCTGTTTAAAACAAAAAGATAC
AAAGAAGN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAGGCTATACAGAG
ATCCCTTGGGGCCTACTCATTGCAGGTTGGACGCCTCTGGGTCACTTTCT
GCTGTCTGTGGACCACTCCAGTCTGCATGTTTGGGTCTCCCCAGGCTGAG
GGCTGAGCTGTTTGTAGAGAGAAGTTATTTCGCCTTTGAGAAAAGTAGGG
AGAACTCAGCCCCTGAATCAGCACTCTGAATGCCTTAGTTTGTTCCCTTG
AAACCCTCTTTGGCTGGACCCTTTCTTCCTTGCTTGGTGTCTCTGCCTTG
TCACATTGGCTACACCTTCCTCCCAGGGCCACTCTCTAATGACCTAATGA
CTCAAGAGAGCCACTGAGCTTGCTCTGGTCCCCATTTCTGACTCCCAGCC
CTCTGTCACAGGTAGCACAGGACTAGACATCCGGGTTATTTCCAATTCCG
TTCCTGCATGATAGTCTGTGGCAAAGTACCCATGTCTCTGTGCCCCAGGC
ATCCCACCTGTAAGAAGGACGGAGGGGTCCATAATCCTTAGTGTCCCTGC
TCTATGCATGTTCACGAAGAAGCAGGACAAGACTTGTGGTCCATCTTGTC
TGCTAACCTGACTCTATTTCCTGGTCCCATGTAACCTTTCCTGGGGCCTA
ANGAAGGAGCTTTGCATCTTTGCTGAGCCTGNTGGTCTCCCATGGATTGA
TATGGGCTGAGACAGGAATGCCTATGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_p13.b1 MSMg01no504_p13.b1 CHROMAT_FILE:
MSMg01no504_p13.b1 PHD_FILE: MSMg01no504_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:46 2005
         (676 letters)



>mm_chr14_70128734_70129809
          Length = 1076

 Score = 1239 bits (641), Expect = 0.0
 Identities = 667/676 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtttattattgcacctagggccttgtgtgcattgggcacgtgctctgctgctgagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gtgtttattattgcacctagggccttgtgtgcattgggcacgtgctctgctgctgagctc 817

                                                                       
Query: 61  tagctcagcccttcttgctaagctttggtttctcgccctctgattactttttccccctcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 816 tagctcagcccttcttgctaagctttggtttctcgccctctgattacttttttcccctcc 757

                                                                       
Query: 121 aacttcccagtagcttgcttgtcaatgttccctgtcttttgcctggatgagaccagcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aacttcccagtagcttgcttgtcaatgttccctgtcttttgcctggatgagaccagcagg 697

                                                                       
Query: 181 caccatcccttctttctttccctgctgcccagtcagcttcttcacttgctacctttgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 caccatcccttctttctttccctgctgcccagtcagcttcttcacttgctacctttgcct 637

                                                                       
Query: 241 tctattccagaccccgtgttgactgcagggcaaatgtgctctcagcgccatgaaacagct 300
            | |  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ccgagcccagaccacgtgttgactgcagggcaaatgtgctctcagcgccatgaaacagct 577

                                                                       
Query: 301 ctcccgtaccacacaggagttgggtggaattaatgtagccaccgggaaccatagtcactt 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctcccgtaccacacgggagttgggtggaattaatgtagccaccgggaaccatagtcactt 517

                                                                       
Query: 361 tctaaagcaagcgctgtgaccagtctactcgtgtgtcatacatagagaagcaggcctaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tctaaagcaagcgctgtgaccagtctactcgtgtgtcatacatagagaagcaggcctaga 457

                                                                       
Query: 421 gctcagtaggcacagtcgtgagtctgtgacactctgttactaagcagatacatcacgctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gctcagtaggcacagtcgtgagtctgtgacactctgttactaagcagatacatcacgctc 397

                                                                       
Query: 481 tgcttggtgacacctgatgtcaggtatgttgctgagtcctgttttctcttgttgggtaaa 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgcttggtgacacctgatgtcagatatgttgctgagtcctgttttctcttgttgggtaaa 337

                                                                       
Query: 541 gaagaaaagggagtttatagggaggaacatgtcaagaaccctgattttcctaaggctagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaagaaaagggagtttatagggaggaacatgtcaagaaccctgattttcctaaggctagg 277

                                                                       
Query: 601 caaaggaatcgaccagagagaagaanaacaaaacaaaattgcccatgatttagctgttta 660
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 276 caaaggaatcgaccagagagaagaaaaacaaaacaaaattgcccatgatttagctgttta 217

                           
Query: 661 aaacaaaaagatacaa 676
           ||||||||||||||||
Sbjct: 216 aaacaaaaagatacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no504_p13.g1 MSMg01no504_p13.g1 CHROMAT_FILE:
MSMg01no504_p13.g1 PHD_FILE: MSMg01no504_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:46 2005
         (621 letters)



>mm_chr14_70075928_70076948
          Length = 1021

 Score = 1162 bits (601), Expect = 0.0
 Identities = 616/621 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccaaggctatacagagatcccttggggcctactcattgcaggttggacgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccaaggctatacagagatcccttggggcctactcattgcaggttggacgcct 260

                                                                       
Query: 61  ctgggtcactttctgctgtctgtggaccactccagtctgcatgtttgggtctccccaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggtcactttctgctgtctgtggaccactccagtctgcatgtttgggtctccccaggc 320

                                                                       
Query: 121 tgagggctgagctgtttgtagagagaagttatttcgcctttgagaaaagtagggagaact 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tgagggctgagctgtttgtagagagaagttatttcgtctttgagaaaagtagggagaact 380

                                                                       
Query: 181 cagcccctgaatcagcactctgaatgccttagtttgttcccttgaaaccctctttggctg 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 cagcccctgaatcagcactctgaatgccttagtttgttcccttaaaaccctctttggctg 440

                                                                       
Query: 241 gaccctttcttccttgcttggtgtctctgccttgtcacattggctacaccttcctcccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaccctttcttccttgcttggtgtctctgccttgtcacattggctacaccttcctcccag 500

                                                                       
Query: 301 ggccactctctaatgacctaatgactcaagagagccactgagcttgctctggtccccatt 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccactttctaatgacctaatgactcaagagagccactgagcttgctctggtccccatt 560

                                                                       
Query: 361 tctgactcccagccctctgtcacaggtagcacaggactagacatccgggttatttccaat 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 tctgactcccagccctctgtcacaggcagcacaggactagacatccgggttatttccaat 620

                                                                       
Query: 421 tccgttcctgcatgatagtctgtggcaaagtacccatgtctctgtgccccaggcatccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccgttcctgcatgatagtctgtggcaaagtacccatgtctctgtgccccaggcatccca 680

                                                                       
Query: 481 cctgtaagaaggacggaggggtccataatccttagtgtccctgctctatgcatgttcacg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgtaagaaggacggaggggtccataatccttagtgtccctgctctatgcatgttcacg 740

                                                                       
Query: 541 aagaagcaggacaagacttgtggtccatcttgtctgctaacctgactctatttcctggtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagaagcaggacaagacttgtggtccatcttgtctgctaacctgactctatttcctggtc 800

                                
Query: 601 ccatgtaacctttcctggggc 621
           || ||||||||||||||||||
Sbjct: 801 ccgtgtaacctttcctggggc 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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