BAC Information

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BAC

Clone NameMSMg01-505L01
Chromosome14 (Build37)
Map Location 46,976,950 - 46,977,551
singlet/doubletsinglet
Overlap genenone
Upstream geneStyx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963
Downstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505L01.T7 (MSMg01no505_l01.b1)MSMg01-505L01.TJ (MSMg01no505_l01.g1)
ACCAG580267AG580268
length750760
length of high quality
(start - end)
602 (70 - 671)646 (80 - 725)
definitionCHROMAT_FILE: MSMg01no505_l01.b1 PHD_FILE: MSMg01no505_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:39 2005CHROMAT_FILE: MSMg01no505_l01.g1 PHD_FILE: MSMg01no505_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTAATGCCATACTTCATGTCAGCAGAAAGCCTCGTAAATC
TCTGTGAAGGACATGACCAGACGCCCCTGCTAATCACGTAGCTGTATGGA
CTTGGTTTCCCTTTCCCGATGGGGGACTTCTCAAGTCTTCCCTGTGGTCC
TAGAAAGACAGGAACAACATTGGGGTCTTTTTTTTTCTTTCCTTGAGTCT
ACTCTTCAAGGTTAAAAAACAGCTGAAGGAGCACATAAAATTGAGCAGAG
TGGTCTTTTGCTCTGAACGTAAAAACTATGCATGTGTCCCCTCCAGATGG
GTCCTCCAGGATGCTTGCCAGAAAAAACAACCAAGGCGACAAGACCCTAG
ACAGCTTCTCTTTTATAATGGAGAGCTTCTGTACTGGCCCCGTGTCTACA
AACTGTGAGTCCCGTGATCAAAAGCTTCCCAGAAGCGCACAGCACAGACA
GGAGAGGTAGGAAACAGACATTAGTGTTTTCAGTAACAAAAAGGGGATTT
GAATCATCACTGTTTTAACTTGGGCAGAGATGCAGCTTCAAAGAGCTCGT
ATGACTAGCACCTTCCACTTGTGTTTGGCAATGAGACATTGGGATTAGGG
GGACGCAGTAAAAACAGATAAAGGCTTCTAGTATGAGAGCATTTACGCCG
AGCACACCAGCTCAGCAGGGAATGCTGGGTAAGAGTCTGAGCTTCTGGCN

NGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGACCAGATCAACAACTGT
ACTGAAACATTCTCAAAAAAAAAAAATGCTACGAAGAGTCAACTAATGAA
CGAAGAATGTCCAACACATTTAGTCATGATGGAAATAGAAATACAAACAG
AAATTACACTGAGATTCCACAAGATTCCATCTCATCCTGGACAGAATGGT
TGTCATCAAGATAAAAACAAACAAACAAACAACAACAATAACAAAAATCA
GCAAATTCTAGTGACAAAGGAAAAATATAGGAAGGAACTCACACATCATG
TGTGGGAATGTTAATTAATGAAGTCACTGTGGGAATGAGTATGGAGGTTG
TTCATGAAACAAAAATTAAAGCTACCACATGTTCTTGTTGTACCCCTGCT
AAGTATATAACCTAAGGAGTCAAACTCAGTGTACACTACAGGTGGCTGCC
GGCCAGTGTTGATCATGGCACTGTCAATCATAGCCAAGGTATGCAATCAC
CTGGTGCTTCTGTTATCAGATGAATGGGCAAGGAAAACATATTATGTACA
TAATATGGTTTAGCCATAAAGAAGAATGAGATTGTGGTATTTGCAGGACA
ACAGATGAAACTGGGAATCATGTTAAATGAAATTAATCAGACTCAGAAAG
ACTACTACCGAATGTTTTGATTTCAGGTGTAATTTGGGGGAGGGGAGGCA
CGAAAATAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_l01.b1 MSMg01no505_l01.b1 CHROMAT_FILE:
MSMg01no505_l01.b1 PHD_FILE: MSMg01no505_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:39 2005
         (602 letters)



>mm_chr14_46976750_46977751
          Length = 1002

 Score = 1164 bits (602), Expect = 0.0
 Identities = 602/602 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacttcatgtcagcagaaagcctcgtaaatctctgtgaaggacatgaccagacgcccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tacttcatgtcagcagaaagcctcgtaaatctctgtgaaggacatgaccagacgcccctg 743

                                                                       
Query: 61  ctaatcacgtagctgtatggacttggtttccctttcccgatgggggacttctcaagtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctaatcacgtagctgtatggacttggtttccctttcccgatgggggacttctcaagtctt 683

                                                                       
Query: 121 ccctgtggtcctagaaagacaggaacaacattggggtctttttttttctttccttgagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccctgtggtcctagaaagacaggaacaacattggggtctttttttttctttccttgagtc 623

                                                                       
Query: 181 tactcttcaaggttaaaaaacagctgaaggagcacataaaattgagcagagtggtctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tactcttcaaggttaaaaaacagctgaaggagcacataaaattgagcagagtggtctttt 563

                                                                       
Query: 241 gctctgaacgtaaaaactatgcatgtgtcccctccagatgggtcctccaggatgcttgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gctctgaacgtaaaaactatgcatgtgtcccctccagatgggtcctccaggatgcttgcc 503

                                                                       
Query: 301 agaaaaaacaaccaaggcgacaagaccctagacagcttctcttttataatggagagcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agaaaaaacaaccaaggcgacaagaccctagacagcttctcttttataatggagagcttc 443

                                                                       
Query: 361 tgtactggccccgtgtctacaaactgtgagtcccgtgatcaaaagcttcccagaagcgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtactggccccgtgtctacaaactgtgagtcccgtgatcaaaagcttcccagaagcgca 383

                                                                       
Query: 421 cagcacagacaggagaggtaggaaacagacattagtgttttcagtaacaaaaaggggatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagcacagacaggagaggtaggaaacagacattagtgttttcagtaacaaaaaggggatt 323

                                                                       
Query: 481 tgaatcatcactgttttaacttgggcagagatgcagcttcaaagagctcgtatgactagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgaatcatcactgttttaacttgggcagagatgcagcttcaaagagctcgtatgactagc 263

                                                                       
Query: 541 accttccacttgtgtttggcaatgagacattgggattagggggacgcagtaaaaacagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 accttccacttgtgtttggcaatgagacattgggattagggggacgcagtaaaaacagat 203

             
Query: 601 aa 602
           ||
Sbjct: 202 aa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)