Query= MSMg01no505_m04.b1 MSMg01no505_m04.b1 CHROMAT_FILE:
MSMg01no505_m04.b1 PHD_FILE: MSMg01no505_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:44 2005
(632 letters)
>mm_chr14_70709399_70710430
Length = 1032
Score = 1127 bits (583), Expect = 0.0
Identities = 629/667 (94%), Gaps = 35/667 (5%)
Strand = Plus / Plus
Query: 1 cactgacgtgctgatgccttggaagacagacacagtgaaggaggcaccaatagccaggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgacgtgctgatgccttggaagacagacacagtgaaggaggcaccaatagccaggcc 260
Query: 61 atcgatgaaattgtggagcccatcgctcagggtgatcatccaggccaaggtcccgatatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcgatgaaattgtggagcccatcgctcagggtgatcatccaggccaaggtcccgatatc 320
Query: 121 agagtagcggacccccttgagccagtagcaagcactctgggatgcctgcaggtcctatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtagcggacccccttgagccagtagcaagcactctgggatgcctgcaggtcctatga 380
Query: 181 gaaaggacacaccagtggacttcaggttacagagtgacctccggagagcctgactcacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaggacacaccagtggacttcaggttacagagtgacctccggagagcctgactcacaa 440
Query: 241 aggcgtggcttctgtgtcgaggcttccccgggggcactcagggctgctgacctgcacaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcgtggcttctgtgtcgaggcttccccgggggcactcagggctgctgacctgcacaga 500
Query: 301 catggagttgacaatgaccttctcgtccgtgccaggcgccttgccatccagctcgctgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catggagttgacaatgaccttctcgtccgtgccaggcgccttgccatccagctcgctgtt 560
Query: 361 gcagtgctgagggatcatgtgatccaggtccccgttctgtagcttctcggtcacaccctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagtgctgagggatcatgtgatccaggtccccgttctgtagcttctcggtcacaccctc 620
Query: 421 ctcctggtccttcttggaaggaagtgtctcggaggtaaaatggttatgcccgtgatggtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcctggtccttcttggaaggaagtgtctcggaggtaaaatggttatgcccgtgatggtg 680
Query: 481 ctagggtaggaagagtgagcagtgttactgatcaaaactgccagcccagcccagcccagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctagggtaggaagagtgagcagtgttactgatcaaaactgccagcccagcccagcccagc 740
Query: 541 ccagcccagccc-----------------------------------ggcacccaccact 565
|||||||||||| ||| |||||||||
Sbjct: 741 ccagcccagcccagcccagcccagcccagcccagcccagcccagcccggcgcccaccact 800
Query: 566 tggaggaagcacgccaaggccggggaagagcttattcctatatccaaggaaactgagcat 625
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggaggaagcacgccaaggctggggaagagcttattcctatatccaaggaaactgagcag 860
Query: 626 gtcacac 632
|||||||
Sbjct: 861 gtcacac 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_m04.g1 MSMg01no505_m04.g1 CHROMAT_FILE:
MSMg01no505_m04.g1 PHD_FILE: MSMg01no505_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:45 2005
(282 letters)
>mm_chr14_70850367_70851048
Length = 682
Score = 522 bits (270), Expect = e-153
Identities = 279/282 (98%)
Strand = Plus / Minus
Query: 1 aaatacaataatataactctgctgctcacctgcacccaccccaagcccgaaatggcgttt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 316 aaatacaataatataactctgctgctcacctgcacccaccccaagcctgaaatggcgttt 257
Query: 61 aaatgaatggtgtcagagttaaatttacctcctaaaaataaccaatctttatatttccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaatgaatggtgtcagagttaaatttacctcctaaaaataaccaatctttatatttccat 197
Query: 121 ttttcttgtttgttttgattttttttaaaagagaagttcttttgtcattttttatttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttttcttgtttgttttgattttttttaaaagagaagttcttttgtcattttttatttctc 137
Query: 181 cagagctgaggaccaaacccagggccttgcgcttgctaggcaagcgctctaccactgagc 240
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 136 cagagctgaggaccaaacccagggccttgtgcttgctaggcaagtgctctaccactgagc 77
Query: 241 taaatccccaaccccttgttttgatttttgagacagggtttc 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 taaatccccaaccccttgttttgatttttgagacagggtttc 35
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
