Query= MSMg01no506_h14.b1 MSMg01no506_h14.b1 CHROMAT_FILE:
MSMg01no506_h14.b1 PHD_FILE: MSMg01no506_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:41 2005
(716 letters)
>mm_chr14_113974937_113976052
Length = 1116
Score = 1013 bits (524), Expect = 0.0
Identities = 567/590 (96%), Gaps = 18/590 (3%)
Strand = Plus / Minus
Query: 128 gtcatgcaagggtgtgaatcaaaagctcttctggcttcttttatttctttgtttcctggc 187
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1116 gtcatgcaagggtgtgattcaaaagctcttctggcttcttttaattctttgtttcctggc 1057
Query: 188 cactcaagattaaatttgcctgctaagtactattaacactatgtgtcaactcatcacagg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 cactcaagattaaatttgcctgctaagtactattaacactatgtgtcaactcatcacagg 997
Query: 248 agcagagcaatacatcaatctaagaaccaaagccttccaaactttgaaactgtgatgaaa 307
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 agcagagcaacacatcaatctaagaaccaaagccttccaaactttgaaactgtgatgaaa 937
Query: 308 ccaacacacacacacacacacacacacacacacacacacacacacacacacacacacaca 367
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 936 ccaacacacacacacacacacacacacacacacacaca-----a-acacacacacacaca 883
Query: 368 cactacatacacattcacctacaacatatataaaacacatacatatacattcataaacac 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 cactacatacacattcacctacaacatatataaaacacatacatatacattcataaacac 823
Query: 428 acatacacatagcacaccttccacatacatgcacatatgtacactataacatgcacagag 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 acatacacatagcacaccttccacatacatgcacatatgtacactataacatgcacagag 763
Query: 488 acacatgcaaaaataataaatgtcatttccccttttccaggtatctcaggtattggctat 547
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 762 acacatgcaaaaataataaatgtcatttccccttttccagttatctcagatattggctat 703
Query: 548 agcaaggcaaactaggctaatacagcaccattttatcagatagccatccagaaacatcgc 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agcaaggcaaactaggctaatacagcaccattttatcagatagccatccagaaaca---- 647
Query: 608 atggtctctaaaagaactttggtatggctaaaagcataactttctgatatttttacaact 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ------tctaaaagaactttggtatggctaaaagcataactttctgatatttttacaact 593
Query: 668 attgattttccctaa-gatataatcatactcaaaatcttaatctcaaaat 716
||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 592 attgattttccctaatg-tataatcatactcaaaatcttaatctcaaaat 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space: 780836
Effective search space used: 780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no506_h14.g1 MSMg01no506_h14.g1 CHROMAT_FILE:
MSMg01no506_h14.g1 PHD_FILE: MSMg01no506_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:41 2005
(688 letters)
>mm_chr14_113791221_113792306
Length = 1086
Score = 1158 bits (599), Expect = 0.0
Identities = 665/687 (96%), Gaps = 2/687 (0%)
Strand = Plus / Plus
Query: 1 cattctatggaaaattttcaaagagaaaaagtaagacccctattgcttaagagctattaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattctatggaaaaatttcaaagagaaaaagtaagacccctattgcttaagagctattaa 260
Query: 61 atcctaaagctgattagaaaaatatctgtgttgaagtgccatgttacatactaagatgct 120
|||||||| ||||||||||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 261 atcctaaacctgattagaaaaaaatctgtgttgaagtgccatgttatgttctaagatgct 320
Query: 121 acaatgtaatctagtattgcttataattaaaatacatcaatagaatggataaatgcttaa 180
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaacgtaacctattattgcttataattaaaatacatcaatagaatggataaatgcttaa 380
Query: 181 atgagtataaaagaggtgatattatttacaaatagtgtgatatttttaattattactgaa 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagtataaaagatgtgatattatttacaaatagtgtgatatttttaattattactgaa 440
Query: 241 ttatgcaattattgttaaatgagtaaatgtgatgattacgttcttttctgagatgttgtt 300
|||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ttatgcaa-aagtgttaaatgagtaaatgtgatgattacgttcttttctgagatgctgtt 499
Query: 301 taatgcaggtcctaattccacttcaatgaattcaaagacagtcaatgaatataagactgt 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taatgcaggtcctaattctacttcaatgaattcaaagacagtcaatgaatataagactgt 559
Query: 361 agtggatataatcctaaaaaaatttcacatggtttatatgtagactaaaaatttctttgt 420
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 560 agtggatataatcttaaaaaaa-ttcacatggtttatatgtagactaaaaatgtctttgt 618
Query: 421 tgttttactgggatgacttgaagaagaattaagggcaaaagctcactccaaattttgtag 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 619 tgttttactgggatgacttgaagaagaattaagggcaaaagctcactccaacttttgtag 678
Query: 481 aaagtacaaatttatgaagggatgtccttaaagaagtcaaatatttacagtggaacagta 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 679 aaagtacaaatttatgaagggatgtccttaaagaagtcagatatttacagtggaacagta 738
Query: 541 gcatttgaaattagatagccctctctcattgaatactcaggaaacccatgctcacaggtg 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gcatttgaaattagatagctctctctcattgaatactcaggaaacccatgctcacaggtg 798
Query: 601 catcctcagacagtgacatattacacatttgcataattaaaacagcaaaaatgaaaagga 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 catcctcaaacagtgacatattacacatttgcataattaaaacagcaaaaatgaaaagga 858
Query: 661 ttaaactaaactgccaaggtcatattt 687
|||||||||||||||||||||||||||
Sbjct: 859 ttaaactaaactgccaaggtcatattt 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1086
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1076
Effective search space: 729528
Effective search space used: 729528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
