BAC Information

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BAC

Clone NameMSMg01-507C22
Chromosome14 (Build37)
Map Location 93,734,930 - 93,929,603
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507C22.T7 (MSMg01no507_c22.b1)MSMg01-507C22.TJ (MSMg01no507_c22.g1)
ACCAG581395AG581396
length778791
length of high quality
(start - end)		646 (49 - 694)424 (79 - 502)
definitionCHROMAT_FILE: MSMg01no507_c22.b1 PHD_FILE: MSMg01no507_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:38 2005CHROMAT_FILE: MSMg01no507_c22.g1 PHD_FILE: MSMg01no507_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,734,930 - 93,735,568)(93,929,180 - 93,929,603)
sequence
NNNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGAT
CCGCGGAATTCATATGCCTAATTCTTTAATAACAGATAGCATTAACTGTA
GTTGAGAACAAAGGAGGCTTTTCAAGGATAGTCTTCTTCTAAATTCATAG
CTTTTGGTGCTTAAATAAAGATCAACCTCAACCCTTTCTCAGTGCGAATG
GAGGAATGTTCTTTTTGGATCATAAGTTTAGCAATAACGCTGAAGGTTGA
ATAGGATCAGATGAATGGTCACAGACTTCACAAGAGGGTTAAAACTGGAA
ATATGAGAAAGCTTCCACAGCAAACTTTCCAACCTACATATTGAACAATA
ACTTTCAGATATGGAACTATCATATAAATATTTCTGAAATGGTTAGTAAG
TATTAATAGGTGTGATATCAAATAGAGAGGTCCTGTAAGCTGGAGGAATT
ATGTTTAAAAATCTCCTGCACTCTGTAAAATATGTCGTATCCACAAGTCT
GCTAGAATCAGAGCCCTTATAATGATCTTCAGAAAACAGAGACAATGAGG
TTGTTGGAATACACATGAATAAGAACTAGTATTTTTTCTCTTGGGTTGAA
TAGTCTTTGTTCTAAACAGTCTAAGTAGCTGGACTTTCTTTCAAAAAGAA
AAAAAAAATCCTACTATTACTGCAGACATCACTGTGACTTTGAGCCTGAT
ATTTGAAACAAAATCACTCCTACATCTCAGTGATAATCGCTTCTTGCCCT
GTGGCTTTTTATCTTCCCTTTGAAAGCC

ATATACGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAACACTTAGTGTAAGAAA
ATACATGTAAAAGGAAATATCATTGTATATCAGTGCAATTCATATATTAG
ATGACTGGGAAACACAAACCAAAATTACAACATAAACTGATCTACTTAAT
TGTATATTACCATTTTTTAAACTTGTATATTGATAACTCAAAAATGAATC
AGTCATANTTACAAAAATTAATCAAGTTAACAAATATCACTATAAAACAA
TTATTGTATTTTTCCATGGCTAAATTATCTGACTTTTCCAGTTGCTCTGT
TATCTTTATAGGCTAGTATTGAATTCATGATACTTTTTCCCTTATAATAT
GTATGAGAAGCAGTTTCAGGAACTCAGTATTAAATGTCAGATATAATATT
GTGTCAGTGAAATTTAAATCATTAATTATGTTTTAGCATTTATATTATGA
TAGTAATTATGTCTAGAAAACCTATTTAGGAGATTTGGAGNCTTGCTAGT
TTATTATTTAAAAATTATACCATCAATTTTTCATTTGAATTTATGGGGGA
AATTAAAGAGTTCTAGTACCTGAGAAAAAAANCAATTGGGCATTGGATTT
TNTTCAAAAATTTCCTAAAGGGATATTAGAAATTTTTGTCTTTACTTTTT
TAAAAAAATTTTTTATTAAGGATTTTCCCACAATTACAATTTCAAGGGTT
CTCTCAAAAAGTCCCCAAAACCCTCCCCCCCCCTNTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_c22.b1 MSMg01no507_c22.b1 CHROMAT_FILE:
MSMg01no507_c22.b1 PHD_FILE: MSMg01no507_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:38 2005
         (646 letters)



>mm_chr14_93734723_93735768
          Length = 1046

 Score = 1236 bits (639), Expect = 0.0
 Identities = 639/639 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcatatgcctaattctttaataacagatagcattaactgtagttgagaacaaagga 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcatatgcctaattctttaataacagatagcattaactgtagttgagaacaaagga 267

                                                                       
Query: 68  ggcttttcaaggatagtcttcttctaaattcatagcttttggtgcttaaataaagatcaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggcttttcaaggatagtcttcttctaaattcatagcttttggtgcttaaataaagatcaa 327

                                                                       
Query: 128 cctcaaccctttctcagtgcgaatggaggaatgttctttttggatcataagtttagcaat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cctcaaccctttctcagtgcgaatggaggaatgttctttttggatcataagtttagcaat 387

                                                                       
Query: 188 aacgctgaaggttgaataggatcagatgaatggtcacagacttcacaagagggttaaaac 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aacgctgaaggttgaataggatcagatgaatggtcacagacttcacaagagggttaaaac 447

                                                                       
Query: 248 tggaaatatgagaaagcttccacagcaaactttccaacctacatattgaacaataacttt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tggaaatatgagaaagcttccacagcaaactttccaacctacatattgaacaataacttt 507

                                                                       
Query: 308 cagatatggaactatcatataaatatttctgaaatggttagtaagtattaataggtgtga 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cagatatggaactatcatataaatatttctgaaatggttagtaagtattaataggtgtga 567

                                                                       
Query: 368 tatcaaatagagaggtcctgtaagctggaggaattatgtttaaaaatctcctgcactctg 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tatcaaatagagaggtcctgtaagctggaggaattatgtttaaaaatctcctgcactctg 627

                                                                       
Query: 428 taaaatatgtcgtatccacaagtctgctagaatcagagcccttataatgatcttcagaaa 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taaaatatgtcgtatccacaagtctgctagaatcagagcccttataatgatcttcagaaa 687

                                                                       
Query: 488 acagagacaatgaggttgttggaatacacatgaataagaactagtattttttctcttggg 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acagagacaatgaggttgttggaatacacatgaataagaactagtattttttctcttggg 747

                                                                       
Query: 548 ttgaatagtctttgttctaaacagtctaagtagctggactttctttcaaaaagaaaaaaa 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttgaatagtctttgttctaaacagtctaagtagctggactttctttcaaaaagaaaaaaa 807

                                                  
Query: 608 aaatcctactattactgcagacatcactgtgactttgag 646
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aaatcctactattactgcagacatcactgtgactttgag 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_c22.g1 MSMg01no507_c22.g1 CHROMAT_FILE:
MSMg01no507_c22.g1 PHD_FILE: MSMg01no507_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:38 2005
         (424 letters)



>mm_chr14_93928980_93929803
          Length = 824

 Score =  814 bits (421), Expect = 0.0
 Identities = 423/424 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaacacttagtgtaagaaaatacatgtaaaaggaaatatcattgtatatcagtgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttaaacacttagtgtaagaaaatacatgtaaaaggaaatatcattgtatatcagtgcaa 565

                                                                       
Query: 61  ttcatatattagatgactgggaaacacaaaccaaaattacaacataaactgatctactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcatatattagatgactgggaaacacaaaccaaaattacaacataaactgatctactta 505

                                                                       
Query: 121 attgtatattaccattttttaaacttgtatattgataactcaaaaatgaatcagtcatan 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 504 attgtatattaccattttttaaacttgtatattgataactcaaaaatgaatcagtcataa 445

                                                                       
Query: 181 ttacaaaaattaatcaagttaacaaatatcactataaaacaattattgtatttttccatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttacaaaaattaatcaagttaacaaatatcactataaaacaattattgtatttttccatg 385

                                                                       
Query: 241 gctaaattatctgacttttccagttgctctgttatctttataggctagtattgaattcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctaaattatctgacttttccagttgctctgttatctttataggctagtattgaattcat 325

                                                                       
Query: 301 gatactttttcccttataatatgtatgagaagcagtttcaggaactcagtattaaatgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatactttttcccttataatatgtatgagaagcagtttcaggaactcagtattaaatgtc 265

                                                                       
Query: 361 agatataatattgtgtcagtgaaatttaaatcattaattatgttttagcatttatattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agatataatattgtgtcagtgaaatttaaatcattaattatgttttagcatttatattat 205

               
Query: 421 gata 424
           ||||
Sbjct: 204 gata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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