BAC Information

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BAC

Clone NameMSMg01-507J14
Chromosome14 (Build37)
Map Location 48,191,761 - 48,385,473
singlet/doubletdoublet
Overlap geneLOC100042787, Ktn1
Upstream geneLOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730
Downstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507J14.T7 (MSMg01no507_j14.b1)MSMg01-507J14.TJ (MSMg01no507_j14.g1)
ACCAG581710AG581711
length741745
length of high quality
(start - end)
631 (85 - 715)550 (80 - 629)
definitionCHROMAT_FILE: MSMg01no507_j14.b1 PHD_FILE: MSMg01no507_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:12 2005CHROMAT_FILE: MSMg01no507_j14.g1 PHD_FILE: MSMg01no507_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,384,843 - 48,385,473)(48,191,761 - 48,192,310)
sequence
NTTTTTACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGACCA
TGCGNGGAATTCATCTATATTTCAGATAACTTGGATATTGATCCAGAAAC
GTTGAGGTAATGTAGCCTTTTCATTGATTATTTGATAATGCGTTGTTTCA
TTTTTATCTACTCTGATTTCTCTAACTCAGACTTAAAAGGGGGGGAGGAG
GTAGCTCTGAGCACATAACTCATCTCACTGGAAAGCATTTCGCTTGCCAA
TTCACATTAGCTAACAGAGCGACCCTCATTCAGAAGAGCACACTGTCAGA
ATGGTCCTCTAACCTGCCCTTATCTTTGTCTAATATTTGAGTGAGAAACT
AAAGGAGTGCCTGGTCTGAAGCAGATTGCCTCGCCTATCATCTTGGAGTA
AGGGAAATCTAGCCTGCGGGATCTTCCGATGGAGGGACTGCACACTGCCA
GCAGCACGTGGAACTGCTGCCTGTGTCTCTTCACCAGCTTACAACTGCAG
CCATTGAATTAATAACCATCAGCTGGGACCCAGAAAGGCCTAACAGCCAG
GGCACTATCCTGGAGCTGCTGGCCTGATATTTAAATATTTATTGATGATA
ATCGGGTGACAGATAGGCATGAGCTGAGCCAGAAAGAAATCCAATCTGCC
TGCACAAGCAAAGCTGCGGCAGGGCAGGGTCCTCCCCTCAGGCCATCGAG
CCATAGGAAGAAAGCCCTTTCTAGGATGTGATGGTGAGGAN
NNNNTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAGGAGCTGGGCGTGGTG
GCCCACGCCTTTAATCCCAGCTCTCGGGAGGAAGAGGCAGGTGGATTTTT
GAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGATAGCCAGGGC
TACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAATTCTG
AATTCTTAAAGGGCCAGTTGACTAGCTCCTGGGAATCCTTTAAAGGTCCA
GGTGCACACTAGAGTGGTGTACTATGATATATCAAAACTTCATGTTTAGA
GGGTGAACCAAACCTCTGCAACCAATAAAACTGTAGCAGTTCTTGGTGGA
CCTCTAGCAAGGAGGGGACTCTTCCAAAGGGTATGGAGATTGATCGGGTG
CGTGGGGGCCTGCAATGGGGCAGAGTTGACCCCGAATCTCTCTCTCTTAA
AGATTTATTTAATGTATATGCACACATTGTAGCTGTCTTCAGACACACCA
GAAGAGTGTATTGGATCCCATTACAGATGGTTGTAAGCCACCATGTGGTT
GCTGGGAATTGAACTCAGGACCTTTGGAAGAACAGTCGGTGCTCTTAACC
TCTGAGTCATCTCTCCAGCCCTACAACCCCGAATCTTCTCAGCACACACT
TTTTATTCAGTTTAAGGGTAGGCCTTGATTACAACAAGGGGTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_j14.b1 MSMg01no507_j14.b1 CHROMAT_FILE:
MSMg01no507_j14.b1 PHD_FILE: MSMg01no507_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:12 2005
         (631 letters)



>mm_chr14_48384643_48385673
          Length = 1031

 Score = 1220 bits (631), Expect = 0.0
 Identities = 631/631 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattgatccagaaacgttgaggtaatgtagccttttcattgattatttgataatgcgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 atattgatccagaaacgttgaggtaatgtagccttttcattgattatttgataatgcgtt 772

                                                                       
Query: 61  gtttcatttttatctactctgatttctctaactcagacttaaaagggggggaggaggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gtttcatttttatctactctgatttctctaactcagacttaaaagggggggaggaggtag 712

                                                                       
Query: 121 ctctgagcacataactcatctcactggaaagcatttcgcttgccaattcacattagctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ctctgagcacataactcatctcactggaaagcatttcgcttgccaattcacattagctaa 652

                                                                       
Query: 181 cagagcgaccctcattcagaagagcacactgtcagaatggtcctctaacctgcccttatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cagagcgaccctcattcagaagagcacactgtcagaatggtcctctaacctgcccttatc 592

                                                                       
Query: 241 tttgtctaatatttgagtgagaaactaaaggagtgcctggtctgaagcagattgcctcgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tttgtctaatatttgagtgagaaactaaaggagtgcctggtctgaagcagattgcctcgc 532

                                                                       
Query: 301 ctatcatcttggagtaagggaaatctagcctgcgggatcttccgatggagggactgcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctatcatcttggagtaagggaaatctagcctgcgggatcttccgatggagggactgcaca 472

                                                                       
Query: 361 ctgccagcagcacgtggaactgctgcctgtgtctcttcaccagcttacaactgcagccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ctgccagcagcacgtggaactgctgcctgtgtctcttcaccagcttacaactgcagccat 412

                                                                       
Query: 421 tgaattaataaccatcagctgggacccagaaaggcctaacagccagggcactatcctgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgaattaataaccatcagctgggacccagaaaggcctaacagccagggcactatcctgga 352

                                                                       
Query: 481 gctgctggcctgatatttaaatatttattgatgataatcgggtgacagataggcatgagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gctgctggcctgatatttaaatatttattgatgataatcgggtgacagataggcatgagc 292

                                                                       
Query: 541 tgagccagaaagaaatccaatctgcctgcacaagcaaagctgcggcagggcagggtcctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgagccagaaagaaatccaatctgcctgcacaagcaaagctgcggcagggcagggtcctc 232

                                          
Query: 601 ccctcaggccatcgagccataggaagaaagc 631
           |||||||||||||||||||||||||||||||
Sbjct: 231 ccctcaggccatcgagccataggaagaaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no507_j14.g1 MSMg01no507_j14.g1 CHROMAT_FILE:
MSMg01no507_j14.g1 PHD_FILE: MSMg01no507_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:12 2005
         (550 letters)



>mm_chr14_48191561_48192510
          Length = 950

 Score = 1056 bits (546), Expect = 0.0
 Identities = 549/550 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaggagctgggcgtggtggcccacgcctttaatcccagctctcgggaggaagaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaggagctgggcgtggtggcccacgcctttaatcccagctctcgggaggaagaggca 260

                                                                       
Query: 61  ggtggatttttgagttcaaggccagcctggtctacaaagtgagttccaggatagccaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtggatttttgagttcaaggccagcctggtctacaaagtgagttccaggatagccaggg 320

                                                                       
Query: 121 ctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaattctgaattcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaattctgaattcttaa 380

                                                                       
Query: 181 agggccagttgactagctcctgggaatcctttaaaggtccaggtgcacactagagtggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggccagttgactagctcctgggaatcctttaaaggtccaggtgcacactagagtggtg 440

                                                                       
Query: 241 tactatgatatatcaaaacttcatgtttagagggtgaaccaaacctctgcaaccaataaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactaggatatatcaaaacttcatgtttagagggtgaaccaaacctctgcaaccaataaa 500

                                                                       
Query: 301 actgtagcagttcttggtggacctctagcaaggaggggactcttccaaagggtatggaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgtagcagttcttggtggacctctagcaaggaggggactcttccaaagggtatggaga 560

                                                                       
Query: 361 ttgatcgggtgcgtgggggcctgcaatggggcagagttgaccccgaatctctctctctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgatcgggtgcgtgggggcctgcaatggggcagagttgaccccgaatctctctctctta 620

                                                                       
Query: 421 aagatttatttaatgtatatgcacacattgtagctgtcttcagacacaccagaagagtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagatttatttaatgtatatgcacacattgtagctgtcttcagacacaccagaagagtgt 680

                                                                       
Query: 481 attggatcccattacagatggttgtaagccaccatgtggttgctgggaattgaactcagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attggatcccattacagatggttgtaagccaccatgtggttgctgggaattgaactcagg 740

                     
Query: 541 acctttggaa 550
           ||||||||||
Sbjct: 741 acctttggaa 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)