BAC Information

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BAC

Clone NameMSMg01-508C22
Chromosome14 (Build37)
Map Location 109,486,052 - 109,486,590
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508C22.T7 (MSMg01no508_c22.b1)MSMg01-508C22.TJ (MSMg01no508_c22.g1)
ACCAG582155AG582156
length770779
length of high quality
(start - end)
519 (53 - 571)550 (82 - 631)
definitionCHROMAT_FILE: MSMg01no508_c22.b1 PHD_FILE: MSMg01no508_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:00 2005CHROMAT_FILE: MSMg01no508_c22.g1 PHD_FILE: MSMg01no508_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTGGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAACCTTTTTCTTTGCTGTCTGCAGGTGGTATTCTCCTG
ATTGCTTTTGTTTCAGAACGTAGAACACTTGTAGAACTCCTGCAGCACCA
TAGCTGCTCACATGATGCCATGCTTCCTTCCATGATGATAATGTATTAAA
TCTCTGAAATTGTAGCTCCAATGAAATGTTTTCCTTTATGAGAGTTGCCA
GGGTCATGGTGTTACTTCATGGCAATAACATACTAAGACAGCCAAAGACG
CTTTGGTGGCAGTACAGGCCAAGATCTCACCATGGTCTTAGGTAGAATCA
GTGGCTACACATGTCAATCTGTTCTTCACTATCCTTGAATCTTCAGTTCT
GACTCTCTTCATTGGGCACATATCCTTCTTCTCTTCCATCTCCACAGCAA
TACTTGATCATTTTAATGCTGCCTGGAGCCCCTGGGTGTCTGAGGTTATG
TCAGAAATGGCCTCAGACATGCTATACCCCAATCATACTCAGCGATGCTG
GGCAGAAGTCATTTTGGGAGTGGTCTGCCCTGTGATTTAATAATCTTGAC
ATTTTAAAATTACTATTGGTTTAATTGTAGTCTCTCAAGTTAGGTTTCAT
CATCTGTCTTACATTATTATTATTATTTATTGGAGNATTTTCTTCATCTC
AGTAAGAAATAATTGTCATGAGGNGTGTTAGTCTGCTATTAGAAGAAAAA
TCTTCTTAGTAGAAATAAGN
NTTTTCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGGGTTACGGTAATAC
CATCAGAAAGAGGGGATATTGTTGTGTCCTTGACCAAGCTTGTTATTATT
TACAAAGAAGAGCAATCATCCTCAGAACAGGTTTTTAATTAAGTGCTTTA
AACAAACTAGCCTGGCATTCTTTAACATCGTGGTTGACTGTTCTAATTAT
CCACCACTGTCAGTAGGTGGCAAATAAGCTTAAGTACTGGATGCAATTAT
TTTCTTGTATGATATGTTAGTGAAAATTCTAACAAATTCTGTTGTCTCAA
AATACTTATCTTCCCTCCATTTTTCTTAAACAGTGTTCTTTCTAAAACAA
ACAAACAAACAAAAAAAACCAATAAAAAATTTTGAGGTTGAGTTGGTGCC
ATTAAGGACTTTACGGACTACATATCTATCCTGACTTTTTCCATCATCTC
CGTGGAAACTAGCTGCAAAGAAAGATACTTTTCTTTTTCAAATGTAAAAA
AGTATTTTACATTTGGTATTTTTCTAGTTCTTATATCAAAAATTCTAATT
TGCTTTTCCAACACTCACTATTTTAATCACTTAAATGTGTGTGCTTTTTG
CCAATCACCTGAAAAACTTTGGTGACTTCCTCAGAATATTTTATGTAACT
CTCTAAATCATTTGGGCTATTTTTATGGTTTTATTTTAATAAACCCTCAN
TGACTTAATCTTTGCCCTGTACTGTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_c22.g1 MSMg01no508_c22.g1 CHROMAT_FILE:
MSMg01no508_c22.g1 PHD_FILE: MSMg01no508_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:00 2005
         (550 letters)



>mm_chr14_109485852_109486801
          Length = 950

 Score =  984 bits (509), Expect = 0.0
 Identities = 536/551 (97%), Gaps = 13/551 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagggttacggtaataccatcagaaagaggggatattgttgtgtccttgaccaagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagggttacggtaataccatcagaaagaggggatattgttgtgtccttgaccaagctt 260

                                                                       
Query: 61  gttattatttacaaagaagagcaatcatcctcagaacaggtttttaattaagtgctttaa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gttattatttacaaagaagagcaatcatcctcagaacaggttttaaattaagtgctttaa 320

                                                                       
Query: 121 acaaactagcctggcattctttaacatcgtggttgactgttctaattatccaccactgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaactagcctggcattctttaacatcgtggttgactgttctaattatccaccactgtc 380

                                                                       
Query: 181 agtaggtggcaaataagcttaagtactggatgcaattattttcttgtatgatatgttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaggtggcaaataagcttaagtactggatgcaattattttcttgtatgatatgttagt 440

                                                                       
Query: 241 gaaaattctaacaaattctgttgtctcaaaatacttatcttccctccatttttcttaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaattctaacaaattctgttgtctcaaaatacttatcttccctccatttttcttaaac 500

                                                                       
Query: 301 agtgttctttctaaaacaaacaaacaaacaaaaaaaaccaataaaaaat-tttgaggttg 359
           |||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||
Sbjct: 501 agtgttctttctaaaacaaacaaacaaa-aaaaaaaaccaataaaaaaaatttgaggttg 559

                                                                       
Query: 360 agttggtgccattaaggactttacggactacatatctatcctgactttttccatcatctc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agttggtgccattaaggactttacggactacatatctatcctgactttttccatcatctc 619

                                                                       
Query: 420 cgtggaaactagctgcaaagaaagatacttttctttttcaaatgtaaaaaagtattttac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||        ||| 
Sbjct: 620 cgtggaaactagctgcaaagaaagatacttttctttttcaaatgtaaa--------tta- 670

                                                                       
Query: 480 atttggtatttttctagttcttatatcaaaaattctaatttgcttttccaacactcacta 539
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 --ttggtatttttctagttcttatatcaaaaattctaatttgcttttccaacactcacta 728

                      
Query: 540 ttttaatcact 550
           |||||||||||
Sbjct: 729 ttttaatcact 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)