BAC Information

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BAC

Clone NameMSMg01-508G19
Chromosome14 (Build37)
Map Location 23,828,770 - 23,829,302
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneEG665075, EG435392, LOC665068
Downstream geneKcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508G19.T7 (MSMg01no508_g19.b1)MSMg01-508G19.TJ (MSMg01no508_g19.g1)
ACCAG582341AG582342
length755795
length of high quality
(start - end)
475 (49 - 523)533 (80 - 612)
definitionCHROMAT_FILE: MSMg01no508_g19.b1 PHD_FILE: MSMg01no508_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:19 2005CHROMAT_FILE: MSMg01no508_g19.g1 PHD_FILE: MSMg01no508_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCAGTGTGTCTACCTCAACAGCCAGCACCTTTACCCACTGAGC
TGAGTCACCACCACTCACGGTGATAAGTCTTTTCACATAGAACTCACTCT
GTAGCTAAGACTAGCCTTGAACTTTTAACAACCCCCTTCCAAAAATTTAC
CAAAGTTGGGTTTGTAAGCACCAGCCACTATACCCAGCCACATTCACATT
TAAATGGAACCTTTAAGATTTTCCTTCCTCATATAAAGATTGGGTTAACA
ATTTCAGGTTGGCCTGGCAAGACAGCTCAGTGTGGAGAGCACTTGCTACT
CTTGAAAAGGCTCCTGCTTCATTTTCAGAGCCTCTGTCTGGTAGCCTACA
ACTACCTGTAATTTCAGCTTTGAGAAATGCAGTGTCCTCTTTTTCTCTCT
GTGTGCACAGACATGGCATACATCCACACACACACACACACACACACACA
CACACACACACACACACACACACACACACAAAATATTTAAAAATAGACTA
AAAGGCCATTAAGATTGTCCTTATCTGTTTAGATTTCTGTTTCATATTGA
TAACTTTCTGTGCATTTGAAAGATTGAAATATCTCATTTAAAAAGCTTCC
CAGAGACTCAAGAGACGGGTCAGGGGTTAAGGGCACTTATTGCCACTGCA
GAGGACCTGGGTTCCGTTATCAGCACCCACCTGGCTGCTCTCAGCCACGT
GTTAA
TTTTCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCTGAGTCTCATGTGAA
GGTCTTATCTGAATGTGATGTCATCTTTACCTTTTTAAAATTAGTAAAAT
TTTGCCAGTCTATCCAGATAAAGCTTTCTTCCATAAAGAACGTATGGCAC
AGACCACATCACTACTCTAAAGAATTTAGACTTAATTAAGGGCCCATTTG
TTCATTACTCCATATTCTGCATATTCTGGTAATCAACTCCATATTTCAAT
GCCTGGACTACAGACAAATGCCTATTTTCTTTCCTGTTTTAGATTGGTAT
TCTCTTTAAATTTATCTTCTCTGGTAATATCTATTATTTCTAGTTGACAT
AAAAAGATATTAATTATTATTTATCTAGATAAAGATGCATTTAATAAGCT
TGGAACTCTAGTGGAACTACAATATTTTCTAATATGTACATATATGTATG
TATATGTATACATATATATGCATATACACATTTACTTTAAAAATAACCTC
ATTCCTAACCACATACTTAATTTGGTATGCAATATGTCACTAAATTCAAG
CTTAAATTTGTCTCTATTAAATTTAACTACTGGTACTTTCCAAAAATATT
TTTGGATATCTATACTTCTGGGGCTTTATATTGATCTTGTACAACTCCGG
CTTAAGAAGATATTCAGAGACACTTTATACCTATGTTCAGGTGGAATATA
GCATTCCCAGAAGAAGTCTCTCCTTATCGCCAGAATTTTATATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_g19.g1 MSMg01no508_g19.g1 CHROMAT_FILE:
MSMg01no508_g19.g1 PHD_FILE: MSMg01no508_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:19 2005
         (533 letters)



>mm_chr14_23828701_23829633
          Length = 933

 Score = 1015 bits (525), Expect = 0.0
 Identities = 531/533 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccctgagtctcatgtgaaggtcttatctgaatgtgatgtcatctttacctttttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tttccctgagtctcatgtgaaggtcttatctgaatgtgatgtcatctttacctttttaaa 543

                                                                       
Query: 61  attagtaaaattttgccagtctatccagataaagctttcttccataaagaacgtatggca 120
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 542 attagtaaaattttgccagcctatccagataaagctttcttccataaagaacctatggca 483

                                                                       
Query: 121 cagaccacatcactactctaaagaatttagacttaattaagggcccatttgttcattact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cagaccacatcactactctaaagaatttagacttaattaagggcccatttgttcattact 423

                                                                       
Query: 181 ccatattctgcatattctggtaatcaactccatatttcaatgcctggactacagacaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccatattctgcatattctggtaatcaactccatatttcaatgcctggactacagacaaat 363

                                                                       
Query: 241 gcctattttctttcctgttttagattggtattctctttaaatttatcttctctggtaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcctattttctttcctgttttagattggtattctctttaaatttatcttctctggtaata 303

                                                                       
Query: 301 tctattatttctagttgacataaaaagatattaattattatttatctagataaagatgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tctattatttctagttgacataaaaagatattaattattatttatctagataaagatgca 243

                                                                       
Query: 361 tttaataagcttggaactctagtggaactacaatattttctaatatgtacatatatgtat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttaataagcttggaactctagtggaactacaatattttctaatatgtacatatatgtat 183

                                                                       
Query: 421 gtatatgtatacatatatatgcatatacacatttactttaaaaataacctcattcctaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gtatatgtatacatatatatgcatatacacatttactttaaaaataacctcattcctaac 123

                                                                
Query: 481 cacatacttaatttggtatgcaatatgtcactaaattcaagcttaaatttgtc 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cacatacttaatttggtatgcaatatgtcactaaattcaagcttaaatttgtc 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)