Query= MSMg01no508_l18.b1 MSMg01no508_l18.b1 CHROMAT_FILE:
MSMg01no508_l18.b1 PHD_FILE: MSMg01no508_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:45 2005
(592 letters)
>mm_chr14_69855162_69856154
Length = 993
Score = 1110 bits (574), Expect = 0.0
Identities = 586/590 (99%), Gaps = 2/590 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatgtttagtttgctatacaagttcagcaggatatgctggtgaattctttgcat 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatgtttagaatgctatacaagttcagcaggatatgctggtgaattctttgcat 263
Query: 64 tttctaaatcgtcatattagtagattttattttcatgagcaattctggccaaataagcac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttctaaatcgtcatattagtagattttattttcatgagcaattctggccaaataagcac 323
Query: 124 ttctggtcaatt-aaaaaaaagttttaaaaataagtatatggggctggagagatggctca 182
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctggtcaattaaaaaaaaagttttaaaaataagtatatggggctggagagatggctca 383
Query: 183 gttgctaagagcatttgttctcacaaagacccagattccttttccagcaaccacttggtg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttgctaagagcatttgttctcacaaagacccagattccttttccagcaaccacttggtg 443
Query: 243 gcttacaaatgtccagaactccagttctagggagcctaactttctcttctaatttcttag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcttacaaatgtccagaactccagttctagggagcctaactttctcttctaatttcttag 503
Query: 303 gataccaggcacacaagtggtgtacatacatacatgcaggcagaaaaaaaaaacctctca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 gataccaggcacacaagtggtgtacatacatacatgcaggcagaaaaaaaaaa-ctctca 562
Query: 363 aacacataaagtgaatatatctaaattatatgttttagtcaacatatatgttagatacca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aacacataaagtgaatatatctaaattatatgttttagtcaacatatatgttagatacca 622
Query: 423 ttatgatatttttgaacaaagtgtgtgttgtggttctccccaccctatttccttgccctt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttatgatatttttgaacaaagtgtgtgttgtggttctccccaccctatttccttgccctt 682
Query: 483 cctccatcccttttctgttcttgtggcctccccatcccacccagaacatgtgggacatga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cctccatcccttttctgttcttgtggcctccccatcccacccagaacatgtgggacatga 742
Query: 543 atatgaagtaatattgaaataatcattcccacagtcacatgtattcctct 592
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atatgaagtaatattgaaataatcattcccacagtcacatgtattcctct 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 993
Length adjustment: 10
Effective length of query: 582
Effective length of database: 983
Effective search space: 572106
Effective search space used: 572106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_l18.g1 MSMg01no508_l18.g1 CHROMAT_FILE:
MSMg01no508_l18.g1 PHD_FILE: MSMg01no508_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:45 2005
(526 letters)
>mm_chr14_70075158_70076083
Length = 926
Score = 909 bits (470), Expect = 0.0
Identities = 484/490 (98%), Gaps = 4/490 (0%)
Strand = Plus / Minus
Query: 39 attcaaggtatgcaccaccactgcccggcccaccccaaggatctcaaggagcacggcata 98
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 926 attcaaggcatgcaccaccactgcccggcccaccccaaggatctcaaggagcatggcata 867
Query: 99 accgtgaacaccacataacacaaaacgccaacttccttaaaacatcagttctctctgtca 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 accgtgaacaccacataacacaaaacgccaacttccttaaaacatcagttctctctgtca 807
Query: 159 tggttttgcaaccagaaggcacagtatgagttctgcaactgacaatattgcgtcagtgtc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tggttttgcaaccagaaggcacagtatgagttctgcaactgacaatattgcgtcagtgtc 747
Query: 219 aaatggctggacacacctggaaccccttattctgt--ttctagagactgagactgggata 276
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 746 aaatggctggacacacctggaaccccttattctgtagt--tagagactgagactgggata 689
Query: 277 ggagagtcttgctccagagtttggggatgtcaaagactatgggtaaaataaggtctcctg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ggagagtcttgctccagagtttggggatgtcaaagactatgggtaaaataaggtctcctg 629
Query: 337 cctaggcccagggtttgcttgactgtgtccctccttactgactggggaaagttagctgaa 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cctaggcccagggtttgcttgactgtgtccctccttactgactggggaaagttagctgaa 569
Query: 397 gagaggagctgactgatgatgggaaagtccatgctgatggagggtaggctagactatgag 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gagaggagctgactgatgatgggaaagtccatgctgatggagggtaggctagactatgag 509
Query: 457 gctaggatcacttacctgaaaggcattgctggcaaagcccaggcctagctgccggcagac 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gctaggatcacttacctgaaaggcattgctggcaaagcccaggcctagctgccggcagac 449
Query: 517 caccatggct 526
||||||||||
Sbjct: 448 caccatggct 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
