BAC Information

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BAC

Clone NameMSMg01-508M08
Chromosome14 (Build37)
Map Location 52,637,234 - 52,637,663
singlet/doubletsinglet
Overlap geneZfp219, G630016D24Rik
Upstream geneRnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik
Downstream geneLOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508M08.T7 (MSMg01no508_m08.b1)MSMg01-508M08.TJ (MSMg01no508_m08.g1)
ACCAG582605AG582606
length755775
length of high quality
(start - end)		249 (74 - 322)431 (82 - 512)
definitionCHROMAT_FILE: MSMg01no508_m08.b1 PHD_FILE: MSMg01no508_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:48 2005CHROMAT_FILE: MSMg01no508_m08.g1 PHD_FILE: MSMg01no508_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGAGAGCCGC
GGAATTCAATCCCCTTCTTTACCATGGAAAGAGAGAATGAACTCTGAAAA
GTTGTCCTCTGGTCCCCACACATGTACCTTCTATGCACGGTATAATTATC
GGACCAGTGAAACTGCTCAGTGAGGCACTTGCTTACAAGAGTGGCCACCT
GAGCTCAGTTCCCACAAGCTGCACAAAGGAAAACTCCACAGGTTGTTTTC
TGACCTCCTCACCTGTGCATTGTGTCATGCCACACATATACACATAATAA
ATATAGAAATTAAAATCTTCAATGTTTTTCTTGTCCTAGAGTACTGCCGT
AGCTTACTCAAAGCCAGCCTGGATTGTCCACACTAGCATTATGCAAAGGG
TTGAGCAGGTTCCTCCCAAATACTTGCTGAGAGCCTTGCAGCTAAAGAAA
ATGATCCAAAAGGTTCAAATTGGTAGCTTCAAAAAACTCACTGTTGCCAG
GTGTGGTGGCGCACACCTTTAATTCCAGCACTGGGGAGGCAGAGGCAAGC
AAATTTCAGAGTTCGAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC
AAAAACCAAAAAAAATGCTCACTGTTGAGGAAGCTGTGCAGAATGTTTCA
GTGGCCACTGAAGTGTGGGTATGGTTTCATATTGGAGAGATCATGACATT
GTGGAATATGTTTGAAGTCTAAACTTTGACTTACTACTTAAATATTCTTA
GGCTG

NGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAAATGGGX
XXXXXXXXXXXXXXXXXXXXTGAAAAAGGCCAGGACAGCCAGGGTTACAC
AGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAATCTCAATTTTTAG
TCTGCCTTCGCACAGGTACTTTACTAAGCATTTATCCTAACTAATGATAT
CTAAACGAGGAAAATACTGTGCAGAGGGAAAAGTCCCCAGTAGTCCCCTC
TAACTGCCCTGTCTGGCTTCCAGGTGAGCCAAGTGTGGCTGGCAATAGCT
ATGGTCCCCTTTACTATCTCAGTTTCCTGCTTGACCTCTGCCTGTCACCT
GGTCACAGCACTGCCACTTTGGCCCGGAGCCTCGGTAAGACCCACCATAG
GGAGGGTGAGAGAAAGGTCCCCCCCGGGGCCTCTCTAACAAAGCTAGAGT
TCACAGTTTGCCCTTCTAACCATTTAGGGCCTCCTCACTGGCATTATCAC
CCTTGAACTCCGAAGAGCACCTTGCATCTGGAAGGTGAGACAAGATAATA
TAGGCCTCCTCCCATTCTCCCAGTGTTGACACACACACACACTCATTATT
ACACCTCTATTAATAAAGGGATTTATCCTCTCTGGTGCTTGTTCCTGATT
GAATCCTTTTAATTCTCTATTTTCTTATAAGTTTATTATCCTGTTCTCGA
AGTATGGTAAATTAAGATATAAATCACTTCGCTACCCTGCATTTTATTTG
GGACGTTGTCGTTAATATTTACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_m08.g1 MSMg01no508_m08.g1 CHROMAT_FILE:
MSMg01no508_m08.g1 PHD_FILE: MSMg01no508_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:48 2005
         (431 letters)



>mm_chr14_52637034_52637864
          Length = 831

 Score =  787 bits (407), Expect = 0.0
 Identities = 424/437 (97%), Gaps = 13/437 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacagccagggttacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacagccagggttacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaatctc 260

                                                                       
Query: 61  aatttttagtctgccttcgcacaggtactttactaagcatttatcctaactaatgatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttttagtctgccttcgcacaggtactttactaagcatttatcctaactaatgatatc 320

                                                                       
Query: 121 taaacgaggaaaatactgtgcagagggaaaagtccccagtagtcccctctaactgccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacgaggaaaatactgtgcagagggaaaagtccccagtagtcccctctaactgccctg 380

                                                                       
Query: 181 tctggcttccaggtgagccaagtgtggctggcaatagctatggtcccctttactatctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggcttccaggtgagccaagtgtggctggcaatagctatggtcccctttactatctca 440

                                                                       
Query: 241 gtttcctgcttgacctctgcctgtcacctggtcacagcactgccactttggcccggagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttcctgcttgacctctgcctgtcacctggtcacagcactgccactttggcccggagcc 500

                                                                       
Query: 301 tcggtaagacccaccatagggagggtgagagaaaggtccccccc------ggggcctctc 354
           |||||||||||||||||||||||||||||||||||||             ||||||||||
Sbjct: 501 tcggtaagacccaccatagggagggtgagagaaaggt-------tgggggggggcctctc 553

                                                                       
Query: 355 taacaaagctagagttcacagtttgcccttctaaccatttagggcctcctcactggcatt 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 taacaaagctagagttcacagtttgcccttctaaccatttagggcctcctcactggcatt 613

                            
Query: 415 atcacccttgaactccg 431
           |||||||||||||||||
Sbjct: 614 atcacccttgaactccg 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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