BAC Information

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BAC

Clone NameMSMg01-511G17
Chromosome14 (Build37)
Map Location 112,979,903 - 112,980,399
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511G17.T7 (MSMg01no511_g17.b1)MSMg01-511G17.TJ (MSMg01no511_g17.g1)
ACCAG584619AG584620
length737769
length of high quality
(start - end)
673 (65 - 737)497 (74 - 570)
definitionCHROMAT_FILE: MSMg01no511_g17.b1 PHD_FILE: MSMg01no511_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:17 2005CHROMAT_FILE: MSMg01no511_g17.g1 PHD_FILE: MSMg01no511_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGAAGGTGACAAGTAAAAGTATTTATTTGCAGATTATATGATAACA
TCCATAAGCAACCCTAATAATTTAACTGGGAAACTCCTACAGCAGATAAA
CAGTTTAAGAACAATAATGGGATACAAAGTTAACTCAAAAATAATTAGTA
GCTTTCCTATAGGCAAATGAGAAAATGATTGAAGAAGAATTCCCAGAACC
AACACCTTTTACAATTTTAATAAAACTATTGTTATAACCTTTACTAAGGT
AATTAAAGACTTTTATAATAAAAAGTTTCAGACAATGAAGATAGAAATTT
AAAAAGATTTCCACATATGGAAAGATCTTACAGCTCATGTATCAGAATGA
TTAGTAAACTATATATACACACCCTACCAAAAACAGTCTACAGAGTTATG
TAATCCCCATTAAAATTCCAACATAAATATGAACAGATCTTGAAAATATT
ATTTTCAGCTTCATATAACAACACACATACACACATAAAGCTATACAACA
GAAAAGCAAATGAACCAAAAAACAAACAAGAATACCAACTCAAGATAGTT
AAAATAAGCTTAAATAATAGCAAACTTTTGGGTGATATTATTATCCCTGA
TTTTAAGTTGTAATACAGAGCTATAGTAATAAAAACAACATGCCATTGGC
ACAAAAACAAGACATGTTGATGAATAGAAGTCTCAGN
ATTAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATATCCCAAATCTGCATATCTCAAATC
ATCTTGGCACACAAGGTAGCAGGCACCCCTCAGGCCAGCCTGGGCCATGG
TGACAAGCTCCTATGGGCCACAACTCTGGCTCTCCTCTCGTGCTGTTGTC
TGAAATCCACATAATGTGAAATTGAATGTTATTTATTCACTTATTGTTGA
GACAAATCTGTTCCTAACAGGACCCCATTCATGGATTCACAGAAGCAGCT
GAGCATCTCTACCTCCAGTTGAGTTGATACATTGTGGCTAGGTGGACACT
GGGCAGAAATTGCCTATCTCTCCAGTAGACCAGTACCATTCTTCAGAGGA
CACAAGTGACAGGTTAGGACAGCTTAGTTCGTCTGAGACAGAATAAGCTA
GTCCTTAATAATTCCTGCTTTTCAAGGTCTGTAAGAATATCCTGGGCCAG
AAGGCTGAAGACTGATTCTCGAACTTCCTGACTTACTGGGGCTGTATGGG
TAGGCAGCTGTCTCTAAAATTCGTCTCAGTTCTGGAAGCTGTTTTAGGCT
TCCTATATTTTTAGATAATATTGATCATTCTTGGATTTCTGATGGGGTTG
AAAGACTACTTATAGTCTCATAGCCAACCCANGCTATTTAGCATTGAGAG
GACATATTTGAAAGATAGTTTTCAGACAGTATACACTAATTCAGTGAGTG
CTCTCTTAGTATGAGGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_g17.g1 MSMg01no511_g17.g1 CHROMAT_FILE:
MSMg01no511_g17.g1 PHD_FILE: MSMg01no511_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:17 2005
         (497 letters)



>mm_chr14_112979703_112980599
          Length = 897

 Score =  891 bits (461), Expect = 0.0
 Identities = 488/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcccaaatctgcatatctcaaatcatcttggcacacaaggtagcaggcacccctcag 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatcccaaatctgcatgtctcaaatcatcttggcacacaaggtagcaggcacccctcag 260

                                                                       
Query: 61  gccagcctgggccatggtgacaagctcctatgggccacaactctggctctcctctcgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 gccagcctgggccatggtgacaagctcctatgggccacaactctggctctcctctcgtga 320

                                                                       
Query: 121 tgttgtctgaaatccacataatgtgaaattgaatgttatttattcacttattgttgagac 180
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tgttgtctgaaatccacagaatgtgaaatttaatgttatttattcacttattgttgagac 380

                                                                       
Query: 181 aaatctgttcctaacaggaccccattcatggattcacagaagcagctgagcatctctacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatctgttcctaacaggaccccattcatggattcacagaagcagctgagcatctctacc 440

                                                                       
Query: 241 tccagttgagttgatacattgtggctaggtggacactgggcagaaattgcctatctctcc 300
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctggtgagttgatacattgtggctaggtggacactgggcagaaattgcctatctctcc 500

                                                                       
Query: 301 agtagaccagtaccattcttcagaggacacaagtgacaggttaggacagcttagttcgtc 360
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtagaccagtaccattcttcagaagacacaagtgacaggttaggacagcttagttcgtc 560

                                                                       
Query: 361 tgagacagaataagctagtccttaataattcctgcttttcaaggtctgtaagaatatcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagacagaataagctagtccttaataattcctgcttttcaaggtctgtaagaatatcct 620

                                                                       
Query: 421 gggccagaaggctgaagactgattctcgaacttcctgacttactggggctgtatgggtag 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 gggccagaaggctgaagactgattctcgaacttcctgacttactggggctgtataggtag 680

                            
Query: 481 gcagctgtctctaaaat 497
           |||||||||||||||||
Sbjct: 681 gcagctgtctctaaaat 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)