BAC Information

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BAC

Clone NameMSMg01-511K05
Chromosome14 (Build37)
Map Location 93,166,372 - 93,166,949
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377, LOC638252
Downstream genePcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511K05.T7 (MSMg01no511_k05.b1)MSMg01-511K05.TJ (MSMg01no511_k05.g1)
ACCAG584786AG584787
length722731
length of high quality
(start - end)
493 (45 - 537)579 (75 - 653)
definitionCHROMAT_FILE: MSMg01no511_k05.b1 PHD_FILE: MSMg01no511_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:34 2005CHROMAT_FILE: MSMg01no511_k05.g1 PHD_FILE: MSMg01no511_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGATGAATACCGAATGGCATAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATTCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGTCTTGCACGCGCTCAACTAGCCAGGAAGAAGGA
CGCTGCAACAGGATCCTTCTGCACACGTTTATTGGGAGAGCTTGATTGTA
GAGGCGAAAAGAACTCGAGCCCAGAACTGGTGCTGCTTTTATAGGCCTAG
GACAGGCATTCTCTCTCATCTGATTGGTTAACTTGTCTCTCATCTGATTG
GTTAACTTTTGTCAATTCTCAAAACCTCACCTTGGCAAAAGAACCTTTAC
TGGCTATGTATGTGTGGTGGCCAGCTGTAGCCAACTGCCACTCTGTAACT
GCCACTCTGTAACTGCCACTCTGTAACTGTCACTCTGTAACTGCCACTCT
GTCACTGCCACTCTGCAACGGCTTCCCACAAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCACATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGCTGGTTGACTCGAGCACCAGGGTAGGTTGTACTACCATT
CTGGAAATCAGTCTGGCGGTTCTTCTGAAAACTGGACATATTACTACCGG
AAGATTCTGTAATACCTCTCCG
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAGGTACTGCATGTGTCTCAAAAAT
GTACTGTTAGTATTTGTATGTATTGCGGGGAGACAACTGAAGTCTAAATC
TACCTAATGGTAGCACTTGAACTTTTTTCTCCACCCATTAATCTACTTCA
TAAAATAATGTATTATCAGTGATTACAGTCTTTCAAAATACTCATAGGAG
AAGATAACCTGAGTACATTTTGAGACTAGTTATTAGGAAAAGAGGATTCT
AGACAATTCCAATACAAAAGAAAAAATAATCCATAACAACTCCATGCACA
TATTGAAAGAAAATTTGGAATAACAGCCCTAATAGCATACCTAAACTAGA
AATAATTGTGGAAGTTGATCAGCTCTCAGGTCATTCACAGTGCATGAATT
GCTCTAACATCCCATTGCTTCCTCTGGCATACAGCTAAACCAGATTATCA
AACTTGCAATAATTTTCTCCATGATAAATAAAAATACTAACAGATTTTGT
GAAACATGGGAAATTAAATACTCAGCGTCCAAATATCAATATTTAATAAA
TGCATCTCCCTCCTTTTGAGACAATGGCGTATAGTTGAGACATATTCTTA
CAGTAGATTTTACAGCAGGATGAGCAATAGCTTCTTATGTTGATACCAAA
GCACATCTCTCTGCCATGCTAGAAAGATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_k05.g1 MSMg01no511_k05.g1 CHROMAT_FILE:
MSMg01no511_k05.g1 PHD_FILE: MSMg01no511_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:34 2005
         (579 letters)



>mm_chr14_93166172_93167149
          Length = 978

 Score = 1089 bits (563), Expect = 0.0
 Identities = 575/579 (99%), Gaps = 1/579 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggtactgcatgtgtctcaaaaatgtactgttagtatttgtatgtattgcggggagac 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaggtactgcatgtgtctcaaaa-tgtactgttagtatttgtatgtattgcggggagac 259

                                                                       
Query: 61  aactgaagtctaaatctacctaatggtagcacttgaacttttttctccacccattaatct 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 260 aactgaagtctaaatctacctaatgttagcacttgaacttttttctccacccattaatct 319

                                                                       
Query: 121 acttcataaaataatgtattatcagtgattacagtctttcaaaatactcataggagaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acttcataaaataatgtattatcagtgattacagtctttcaaaatactcataggagaaga 379

                                                                       
Query: 181 taacctgagtacattttgagactagttattaggaaaagaggattctagacaattccaata 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taacctgtgtacattttgagactagttattaggaaaagaggattctagacaattccaata 439

                                                                       
Query: 241 caaaagaaaaaataatccataacaactccatgcacatattgaaagaaaatttggaataac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caaaagaaaaaataatccataacaactccatgcacatattgaaagaaaatttggaataac 499

                                                                       
Query: 301 agccctaatagcatacctaaactagaaataattgtggaagttgatcagctctcaggtcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agccctaatagcatacctaaactagaaataattgtggaagttgatcagctctcaggtcat 559

                                                                       
Query: 361 tcacagtgcatgaattgctctaacatcccattgcttcctctggcatacagctaaaccaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcacagtgcatgaattgctctaacatcccattgcttcctctggcatacagctaaaccaga 619

                                                                       
Query: 421 ttatcaaacttgcaataattttctccatgataaataaaaatactaacagattttgtgaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttatcaaacttgcaataattttctccatgataaataaaaatactaacagattttgtgaaa 679

                                                                       
Query: 481 catgggaaattaaatactcagcgtccaaatatcaatatttaataaatgcatctccctcct 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 680 catgggaaattaaatactcagcgtccaaatattaatatttaataaatgcatctccctcct 739

                                                  
Query: 541 tttgagacaatggcgtatagttgagacatattcttacag 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttgagacaatggcgtatagttgagacatattcttacag 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 978
Length adjustment: 10
Effective length of query: 569
Effective length of database: 968
Effective search space:   550792
Effective search space used:   550792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)