Query= MSMg01no512_a17.b1 MSMg01no512_a17.b1 CHROMAT_FILE:
MSMg01no512_a17.b1 PHD_FILE: MSMg01no512_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:04 2005
(529 letters)
>mm_chr14_17849932_17850860
Length = 929
Score = 847 bits (438), Expect = 0.0
Identities = 487/506 (96%), Gaps = 11/506 (2%)
Strand = Plus / Minus
Query: 5 gaattctgaccttggcttctagagtgctaggtcacatttgagagcctgcattattgtgcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gaattctgaccttggcttctagagtgctaggtcacatttgagagcctgcattattgtgcc 537
Query: 65 ataagggaatgaccaattgctcagaattttgtctccaacatcgtagtattaagtttcact 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 536 ataagggaatgaccaattgctcagaattttgtctccaacattgtagtattaagtttcact 477
Query: 125 caaaccaacaatattttcaacagcctcatgaatactgtaagatattttaatatttacttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 caaaccaacaatattttcaacagcctcatgaatactgtaagatattttaatatttacttg 417
Query: 185 actgataaacttgaaatgacatctctgcttcatgcttcatgcatgtacttttgttggcaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 416 actgataaacttgaaatgacatctctgcttcatgcttcatgcatgtacttttgttgacaa 357
Query: 245 agttaaaatcatattatatatacatactattccatgaacaaatgactaatttatataatt 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 356 agttaaaatcatattatatatacatactattccatgaacaaaagactaatttatataatt 297
Query: 305 tttcgccaattagacattatactattgctgtgctgaattctattgtggtgagctttctac 364
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 296 tttcgccaattagatattatactattgctgtgctgaattctattgtggtgaactttctaa 237
Query: 365 ataaaccaccagaaattacctgcaaatcaagtgagaaagagagagagagagagagagagg 424
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 236 ataaaccaccagaaattacctgcaaatcaagtgaaaaagagagagagagagagagagag- 178
Query: 425 aagagagagagagggagagagagagagagag-acagagag--agagagagagagagagag 481
|||||||||||| ||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct: 177 -agagagagagagagagagagagagagagagga-agagaggaagagagagagagagagag 120
Query: 482 ag--agagaggaagagagga-agaga 504
|| |||||| |||||||| |||||
Sbjct: 119 agtgagagag--agagaggagagaga 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 172
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_a17.g1 MSMg01no512_a17.g1 CHROMAT_FILE:
MSMg01no512_a17.g1 PHD_FILE: MSMg01no512_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:04 2005
(588 letters)
>mm_chr14_17667068_17668055
Length = 988
Score = 1114 bits (576), Expect = 0.0
Identities = 585/588 (99%)
Strand = Plus / Plus
Query: 1 ctaaatgtccattcatgatggaaacagtactagaagagagctaagtaaagggatgcactt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaatgtccattcatgatagaaacagtactagaagagagctaagtaaagggatgcactt 260
Query: 61 gaggtttccaagaacttgatatttatattttaatatggaagatagagacacaaacaccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtttccaagaacttgatatttatattttaatatggaagatagagacacaaacaccta 320
Query: 121 ttactaactgattatgtataaatattatgtataaatatgattatgtataaatattcattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactaactgattatgtataaatattatgtataaatatgattatgtataaatattcattt 380
Query: 181 ttattagaaaatgaacttctggcatgttttcatatccagttcacgagaggaaaattaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttattagaaaatgaacttctggcatgttttcatatccagttcacgagaggaaaattaata 440
Query: 241 gaacagtagttactcctggttcccccaagcagtgagtttaaaatcaaatatttaatattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacagtagttactcctggttcccccaagcagtgagtttaaaatcaaatatttaatattt 500
Query: 301 atttagcacttaaagactgtaacatacatataatttgatggaaaatatatactctgagaa 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttatcacttaaagactgtaacatacatataatttgatggaaaatatatactctgagaa 560
Query: 361 gtaagattgtaagtatagatgtatttcaaacaaattaagaatcagctatgttccaaagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaagattgtaagtatagatgtatttcaaacaaattaagaatcagctatgttccaaagaa 620
Query: 421 tagagctttctaactagttctctaaaaatagatgagaagaagtaggctaaagaagttgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagagctttctaactagttctctaaaaatagatgagaagaagtaggctaaagaagttgat 680
Query: 481 ctcttttaggcctgaaagggaagaggtgcaaagagagcctgactcaagcatccatcacta 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctcttaggcctgaaagggaagaggtgcaaagagagcctgactcaagcatccatcacta 740
Query: 541 ttgggctcatagttcaaggcataagatccaaaatgttactaactccat 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgggctcatagttcaaggcataagatccaaaatgttactaactccat 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
