BAC Information

Click to search

BAC

Clone NameMSMg01-512B18
Chromosome14 (Build37)
Map Location 50,176,638 - 50,320,649
singlet/doubletdoublet
Overlap gene3632451O06Rik
Upstream gene4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
Downstream geneLOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512B18.T7 (MSMg01no512_b18.b1)MSMg01-512B18.TJ (MSMg01no512_b18.g1)
ACCAG585146AG585147
length777778
length of high quality
(start - end)		579 (38 - 616)536 (69 - 604)
definitionCHROMAT_FILE: MSMg01no512_b18.b1 PHD_FILE: MSMg01no512_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:09 2005CHROMAT_FILE: MSMg01no512_b18.g1 PHD_FILE: MSMg01no512_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,320,075 - 50,320,649)(50,176,638 - 50,177,173)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTC
CTGATAGGCAGTCTTTGAGCTGGTAATTTGGCTATGTGTACCTTTAGATT
GAAAATACTGGCTTCTCTTGGATCTCGAGTCTTCAGGCCTTTGGTCTGAA
ACTGTACAAGTGACTACCATGGCTCCCAGGCCTTTGGGTTGGATCAGTAA
GCAATCCACCACTGCTCTTGGTTCTCAGTATCTATAATCTTGTGAGCCAA
TTCCTTTTGAGCATACACATTCTGCTCCCCCCACCCCTGCCTCGAGTCTC
ACTCCATCATCCCTGTTCCTCTCTTCTTTTCCCTCTCCTTTTTTCTGGCT
TTGCTTTTCTGGATAATATTTACTCATACACTTTGAACTCTAGCATAATC
TTAATCATTTTTTGGTTATTTTTTATTAGTTATTTTCTTTATTTACATTT
CAAATGCTATCCCCTTTCCTTGTTTCCCCTCCAAAAAAATCCCTGTCCCA
TCCCTCCTCCTCCTGCTCATTAACTCACCCACTCCCAATTCCCAGTCCTG
GCATTTCCCTACACTGGAGCATAGAGCCTTCCCAATACCAAGGGCCTCTC
CTCTCATTGATGCCCCACAAGGCCATCCTTTGCTACATATGCGGATGGAG
CCTTGAGTTCATCCATGTATACTCTTTGGTTGGTGATTTAGTCCCTGGGA
GCTCTAGGGATACTGGGTGGGACATATTGTTGTTTCCTCTATGGGGCTAC
AACACCTTCAGCAACTTGGGTCCTTTA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGTAGGACCCAGTAGCACATGTCGATGTTTC
CTTAAAAAGAGCTCATTAAATACATATATTGTTTATCATTGTTGCCTGTG
TTGTCATTTGGAAGCTCAAGTAGGAAAACCTGCTTCCAAGCTCACACAGG
TTTTTGGCAGAACTAATTTCTAGAATTAGAGTGGAACTAATCCCCATGGA
ATTTTATTTTGTTTTTCTTTTATTTTGTTTTTCATATCACAATGTAACTC
GGAAAAGGGGATCGCACTCCTTCTAGATTTGCGGCTTCTTCTAGACAAGA
GGAAAAACATGGGGAGGAAGAAGCTCACATATTTCCTCACCATTCTCCTT
CCCCCTCACCAAGAATTTGAGGAGGAAAAATTGCAATTTCCAAGTGTGTG
CTGCTTTATTTGTACAGCTAAAGTCAGGAGCTCGCATATAAGGTTATGTC
CTTTAGCAGAATTCCTTAAGCATTTGGCTACACAGGAGTAGCTAAAGGAA
CTAGTCAAAGCAGGAAAAAGGAAATATGCAAACAAGACTACTGTTTGCAT
AAGAATGGAAGAGTGGATTANGTGTTATAAATACATCTATGAAAGAGAAA
TGACTCCTAATGGGATAGGGATTCAGAGAAAGTCCTGTGGCAAATGAGNC
AGAAACTTCTGAAGAGACTGACTTTAGTAGCTGCCTGGACTATCATGGTT
ATGCAAACCTGTAATTTCAGCAAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_b18.b1 MSMg01no512_b18.b1 CHROMAT_FILE:
MSMg01no512_b18.b1 PHD_FILE: MSMg01no512_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:09 2005
         (579 letters)



>mm_chr14_50319857_50320835
          Length = 979

 Score = 1112 bits (575), Expect = 0.0
 Identities = 575/575 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcctgataggcagtctttgagctggtaatttggctatgtgtacctttagattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaattcctcctgataggcagtctttgagctggtaatttggctatgtgtacctttagattg 734

                                                                       
Query: 65  aaaatactggcttctcttggatctcgagtcttcaggcctttggtctgaaactgtacaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aaaatactggcttctcttggatctcgagtcttcaggcctttggtctgaaactgtacaagt 674

                                                                       
Query: 125 gactaccatggctcccaggcctttgggttggatcagtaagcaatccaccactgctcttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gactaccatggctcccaggcctttgggttggatcagtaagcaatccaccactgctcttgg 614

                                                                       
Query: 185 ttctcagtatctataatcttgtgagccaattccttttgagcatacacattctgctccccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttctcagtatctataatcttgtgagccaattccttttgagcatacacattctgctccccc 554

                                                                       
Query: 245 cacccctgcctcgagtctcactccatcatccctgttcctctcttcttttccctctccttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cacccctgcctcgagtctcactccatcatccctgttcctctcttcttttccctctccttt 494

                                                                       
Query: 305 tttctggctttgcttttctggataatatttactcatacactttgaactctagcataatct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttctggctttgcttttctggataatatttactcatacactttgaactctagcataatct 434

                                                                       
Query: 365 taatcattttttggttattttttattagttattttctttatttacatttcaaatgctatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taatcattttttggttattttttattagttattttctttatttacatttcaaatgctatc 374

                                                                       
Query: 425 ccctttccttgtttcccctccaaaaaaatccctgtcccatccctcctcctcctgctcatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccctttccttgtttcccctccaaaaaaatccctgtcccatccctcctcctcctgctcatt 314

                                                                       
Query: 485 aactcacccactcccaattcccagtcctggcatttccctacactggagcatagagccttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aactcacccactcccaattcccagtcctggcatttccctacactggagcatagagccttc 254

                                              
Query: 545 ccaataccaagggcctctcctctcattgatgcccc 579
           |||||||||||||||||||||||||||||||||||
Sbjct: 253 ccaataccaagggcctctcctctcattgatgcccc 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_b18.g1 MSMg01no512_b18.g1 CHROMAT_FILE:
MSMg01no512_b18.g1 PHD_FILE: MSMg01no512_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:09 2005
         (536 letters)



>mm_chr14_50176438_50177373
          Length = 936

 Score = 1036 bits (536), Expect = 0.0
 Identities = 536/536 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtaggacccagtagcacatgtcgatgtttccttaaaaagagctcattaaatacatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtaggacccagtagcacatgtcgatgtttccttaaaaagagctcattaaatacatata 260

                                                                       
Query: 61  ttgtttatcattgttgcctgtgttgtcatttggaagctcaagtaggaaaacctgcttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtttatcattgttgcctgtgttgtcatttggaagctcaagtaggaaaacctgcttcca 320

                                                                       
Query: 121 agctcacacaggtttttggcagaactaatttctagaattagagtggaactaatccccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctcacacaggtttttggcagaactaatttctagaattagagtggaactaatccccatg 380

                                                                       
Query: 181 gaattttattttgtttttcttttattttgtttttcatatcacaatgtaactcggaaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattttattttgtttttcttttattttgtttttcatatcacaatgtaactcggaaaagg 440

                                                                       
Query: 241 ggatcgcactccttctagatttgcggcttcttctagacaagaggaaaaacatggggagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatcgcactccttctagatttgcggcttcttctagacaagaggaaaaacatggggagga 500

                                                                       
Query: 301 agaagctcacatatttcctcaccattctccttccccctcaccaagaatttgaggaggaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagctcacatatttcctcaccattctccttccccctcaccaagaatttgaggaggaaa 560

                                                                       
Query: 361 aattgcaatttccaagtgtgtgctgctttatttgtacagctaaagtcaggagctcgcata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattgcaatttccaagtgtgtgctgctttatttgtacagctaaagtcaggagctcgcata 620

                                                                       
Query: 421 taaggttatgtcctttagcagaattccttaagcatttggctacacaggagtagctaaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaggttatgtcctttagcagaattccttaagcatttggctacacaggagtagctaaagg 680

                                                                   
Query: 481 aactagtcaaagcaggaaaaaggaaatatgcaaacaagactactgtttgcataaga 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactagtcaaagcaggaaaaaggaaatatgcaaacaagactactgtttgcataaga 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |