BAC Information

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BAC

Clone NameMSMg01-512C05
Chromosome14 (Build37)
Map Location 15,670,826 - 15,671,255
singlet/doubletsinglet
Overlap genenone
Upstream geneGm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7
Downstream geneNek10, Lrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512C05.T7 (MSMg01no512_c05.b1)MSMg01-512C05.TJ (MSMg01no512_c05.g1)
ACCAG585168AG585169
length732745
length of high quality
(start - end)
147 (132 - 278)439 (68 - 506)
definitionCHROMAT_FILE: MSMg01no512_c05.b1 PHD_FILE: MSMg01no512_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:11 2005CHROMAT_FILE: MSMg01no512_c05.g1 PHD_FILE: MSMg01no512_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAGAGGATCCGCGGAATTCT
CATTTTCCGAATACCTAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCA
TCCATAATCATCAGGGAAATGCAAATCATAACAACCCTGAGATCCCACCT
CATGCGACTCATAATGGCTAAAATCAAAAATTCAGGTGACAGCAGATGCT
GGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGC
AAGCTTGTACAACCACTCTGGAAATCAGTCTGACGGTCCCTCAGAAAATT
GGATGTAGTACTACCGGAGGATCCCACAATACCTCTCATAGGCATATATC
CAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATA
GTAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACTCAGATGTCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATTTACACTATGAAGTACT
ACTCAGCTGATAATAACAATGAATTTATGAATTTCCTAGCGCAATGGATG
GACCTGGACGGCATCATCCTGAGTGACGGAACCCAATTACAAAAGAACTC
ACATGATATGTACTCACTGATAATTGGATATTATTCCCGAAACTTATGAT
ACCCAAGATACAAGATACTATCTGCCCAAACCTATGAACCTCTCTATCAA
CTAACATCTAAGTGTAGAAACTTTTGCCCCTG
ATTTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCGGCCAAAATCACAAAAGGCCATGCTAGGGAT
TACTCCAAGGTTCCAGTGAATGTCAGCAAGCCTTTGCCATCACTGCTCTT
TCCTCTACTCTTCCTCAAGCCAGTGTGCAGGCCTAGTCTGTCTCCACTTC
TCATGGCCAGTCTTCCTGCTCATGGCCTTCTAAAACCACATCATGGGTTT
TACAGAGGAACCATAAATCAGGCTGCTGGGAGCCTTCTCCTTTCTCTTCT
TAGTTATTTGATATGTTTGGACTGTCGTGCAGGTCTCTTCCTTCAAGAGT
AATGCCCTTCTTCTGGCCAGGTTCTCGTTACTTCTACTGATCTTTTTTCT
CATGGTGCCTCTCCTTCAGGTTCTCATCATCATAAAATTATTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTAAAT
TATACTCATTTTTTCTCATGCCTTTTCTTCTTCTACCTATTCTTTGACTT
TCCCTATGTACCCTCAACTGGGCCCTATTTCAGATTCTTTCCCGCTTTAA
ACTTTGGTTTTATGGCCCTTATAATTTTTAAAACTATACAAATACTTGGT
ATAACATTAAAAGCATACTCTTCCTCGCTCCGGGTGCAACCATTTTCTTG
TTTGTAATATTATTCAAATGGACCCCTTTTAATTTTTCTATTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_c05.g1 MSMg01no512_c05.g1 CHROMAT_FILE:
MSMg01no512_c05.g1 PHD_FILE: MSMg01no512_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:11 2005
         (439 letters)



>mm_chr14_15670626_15671464
          Length = 839

 Score =  812 bits (420), Expect = 0.0
 Identities = 429/434 (98%), Gaps = 4/434 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcggccaaaatcacaaaaggccatgctagggattactccaaggttccagtgaatgtcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcggccaaaatcacaaaaggccatgctagggattactccaaggttccagtgaatgtcagc 260

                                                                       
Query: 61  aagcctttgccatcactgctctttcctctactcttcctcaagccagtgtgcaggcctagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcctttgccatcactgctctttcctctactcttcctcaagccagtgtgcaggcctagt 320

                                                                       
Query: 121 ctgtctccacttctcatggccagtcttcctgctcatggccttctaaaaccacatcatggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtctccacttctcatggccagtcttcctgctcatggccttctaaaaccacatcatggg 380

                                                                       
Query: 181 ttttacagaggaaccataaatcaggctgctgggagccttctcctttctcttcttagttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttacagaggaaccataaatcaggctgctgggagccttctcctttctcttcttagttat 440

                                                                       
Query: 241 ttgatatgtttggactgtcgtgcaggtctcttccttcaagagtaatgcccttcttctggc 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ttgatatgtttggactgtcgtgcaggtctcttccttcaggagtaatgcccttcttctggc 500

                                                                       
Query: 301 caggttctcgttacttctactgatcttttttctcatggtgcctctccttcaggttctcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggttctcgttacttctactgatcttttttctcatggtgcctctccttcaggttctcat 560

                                                                       
Query: 361 catcataaaattattctctctctctctctctctctctctctctctctctctctctctctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcataaaattattctctctctctctctctctctctctctctctctctctctctctctc 620

                         
Query: 421 tctctctttaaatt 434
           |||    |||||||
Sbjct: 621 tct----ttaaatt 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)