BAC Information

Click to search

BAC

Clone NameMSMg01-512L21
Chromosome14 (Build37)
Map Location 58,421,603 - 58,422,038
singlet/doubletsinglet
Overlap geneSap18
Upstream gene9830124H08Rik, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2
Downstream geneF630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512L21.T7 (MSMg01no512_l21.b1)MSMg01-512L21.TJ (MSMg01no512_l21.g1)
ACCAG585631AG585632
length777754
length of high quality
(start - end)
585 (37 - 621)436 (67 - 502)
definitionCHROMAT_FILE: MSMg01no512_l21.b1 PHD_FILE: MSMg01no512_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:00 2005CHROMAT_FILE: MSMg01no512_l21.g1 PHD_FILE: MSMg01no512_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGG
CCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACA
TCCAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACT
AGACAAGGCTGCCCACTTTCTCCCTACCTATTCAACATTGTACTTGAAGT
CCTAGCCAGAGCAATTCGACAACAAAAGGAAATCAAGGGGATACAAATTG
GAAAAGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGAATAT
ATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAG
CTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCT
TTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACA
CCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAAC
TAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAG
AAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATT
GGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAG
ATTCAATGCAATCCCCATCAAAATTCCAACTCCATTCTTCAACGAATTAG
AAAGAGCAATCTGCAAATTCATCTGGGAATACAAAAACCTAGAATAGCAA
AAACTCTTCTCTAGGATAAAAGAACTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATAAAGCAGGGCCAGTTGTTCCTAATGCCCATC
ATGAGCTAACCAAGCAGCCACACCTTTAGCAGCCACAGGAATCAGTCACT
GCAGCTCAGTTGTGCAGGTTTTGTGAGACATGCTTAGCAGTGTGGCTCAG
CTGTCCCACATAAGCTAGGAATAGAAATGCGTATCAAAGAGTAACTACTT
AGTAGCTTTCCCCTCTCACTCGCCCTCCCTTCAGGTGCATGTGCCAGCAT
GCACATTACACATCTAATAGGAAACAATGACTTCGGGCTCAGCCATCCCA
TTTACTCTGTAACTACTACTCTAAAGTCTACTGCAAATGTTTAGCTTTCA
TAGTTCTCCAGTGAGGTCTCCAGCACTCAACAGGCTGTATTTCCACTCTC
GGCTCAAGGTAAGCCTCCCTCATAGCCTAGTTTGGATTCATTTCCTCCCT
TCACTTGGTGCCCCAGAGGCAAAAGGGGGTCAGATCCCTTANGACTGGAG
CTGTGAGCCATCATACAGATGCTGGGAACAGACCTGGGTCCTCTGCAAAG
ACAAGTGTTCCTAACCGGGCGTGTTGGCGGGATTTTTGAGTTCGAGGCCA
GCCTGGCCTAAAAGTGAGGTTCCAGAAAAGCCAGGGTTACCCAAAAAAAT
CTTGTCTCCCGGAAAATNTNNNANNTTAATGGAAAGGACCCGGGGTCTTT
ACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_l21.g1 MSMg01no512_l21.g1 CHROMAT_FILE:
MSMg01no512_l21.g1 PHD_FILE: MSMg01no512_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:00 2005
         (436 letters)



>mm_chr14_58421403_58422238
          Length = 836

 Score =  828 bits (428), Expect = 0.0
 Identities = 434/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaagcagggccagttgttcctaatgcccatcatgagctaaccaagcagccacacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aataaagcagggccagttgttcctaatgcccatcatgagctaaccaagcagccacacctt 577

                                                                       
Query: 61  tagcagccacaggaatcagtcactgcagctcagttgtgcaggttttgtgagacatgctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tagcagccacaggaatcagtcactgcagctcagttgtgcaggttttgtgagacatgctta 517

                                                                       
Query: 121 gcagtgtggctcagctgtcccacataagctaggaatagaaatgcgtatcaaagagtaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gcagtgtggctcagctgtcccacataagctaggaatagaaatgcgtatcaaagagtaact 457

                                                                       
Query: 181 acttagtagctttcccctctcactcgccctcccttcaggtgcatgtgccagcatgcacat 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acttagtagcttttccctctcactcgccctcccttcaggtgcatgtgccagcatgcacat 397

                                                                       
Query: 241 tacacatctaataggaaacaatgacttcgggctcagccatcccatttactctgtaactac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tacacatctaataggaaacaatgacttcgggctcagccatcccatttactctgtaactac 337

                                                                       
Query: 301 tactctaaagtctactgcaaatgtttagctttcatagttctccagtgaggtctccagcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tactctaaagtctactgcaaatgtttagctttcatagttctccagtgaggtctccagcac 277

                                                                       
Query: 361 tcaacaggctgtatttccactctcggctcaaggtaagcctccctcatagcctagtttgga 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcaacaggctgtatttccattctcggctcaaggtaagcctccctcatagcctagtttgga 217

                           
Query: 421 ttcatttcctcccttc 436
           ||||||||||||||||
Sbjct: 216 ttcatttcctcccttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)