Query= MSMg01no512_m01.b1 MSMg01no512_m01.b1 CHROMAT_FILE:
MSMg01no512_m01.b1 PHD_FILE: MSMg01no512_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:01 2005
(607 letters)
>mm_chr14_114434359_114435365
Length = 1007
Score = 1087 bits (562), Expect = 0.0
Identities = 600/623 (96%), Gaps = 16/623 (2%)
Strand = Plus / Plus
Query: 1 aagaaatagaaggcagttaagataatataaaaccagtctgctagacatgcaatagatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aagaaatagaaggcagttaagataatataaaaccagtctgctagacatgcaatagatttc 244
Query: 61 tctctgggaagttattatagtgttattttcatataattcagccactgattggtataatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tctctgggaagttattatagtgttattttcatataattcagccactgattggtataatac 304
Query: 121 tattatattcatgtacttctactgtagggatgcatgagttttaaaaagtataaaatcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tattatattcatgtacttctactgtagggatgcatgagttttaaaaagtataaaatcatg 364
Query: 181 taaaacataccaatatcttctttacaaaacctatctacaacacattcaaatgagatgtgt 240
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 365 taaaacataacaatatcttctttacaaaacctatctacaacatattcaaatgagatgtgt 424
Query: 241 taatgtccttatgcatattttccattaatatgacctattcatattctataaagatttgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 taatgtccttatgcatattttccattaatatgacctattcatattctataaagatttgaa 484
Query: 301 atattaaaaagaaattcatatgtataaaattaactcaataacatatttgttagttttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atattaaaaagaaattcatatgtataaaattaactcaataacatatttgttagttttaaa 544
Query: 361 aatagtattcttcaatgacttttttgttattgaactattatacctagcctaagaaatcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aatagtattcttcaatgacttttttgttattgaactattatacctagcctaagaaatcca 604
Query: 421 gaagacttcctcaaaatattgtttttattagaaaacctttattgcaatctcttttgtata 480
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 605 gaagacttcctcaaaatattgtttttactagaaaacctttattgcaatctattttgtata 664
Query: 481 atc----------------atgttttctatttagtttgctaaaaaggcctctattttctt 524
||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 665 atcgctatttgttgcaatcatgttttctatttagtttgctaaaaaggcctcttttttctt 724
Query: 525 tgtctgtgatatttttgtatttcaagagaataatctaaacactgtatatacttttccctg 584
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tgtctgtgatatttttgcatttcaagagaataatctaaacactgtatatacttttccctg 784
Query: 585 agtcttgnttacagtggagggct 607
||||||| |||||||||||||||
Sbjct: 785 agtcttgtttacagtggagggct 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_m01.g1 MSMg01no512_m01.g1 CHROMAT_FILE:
MSMg01no512_m01.g1 PHD_FILE: MSMg01no512_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:01 2005
(665 letters)
>mm_chr14_114628752_114629816
Length = 1065
Score = 1210 bits (626), Expect = 0.0
Identities = 653/664 (98%), Gaps = 4/664 (0%)
Strand = Plus / Minus
Query: 1 aaaatcttttttaaaagttgcgttttgaaaataccttactaactaatgggttgccaaaaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 955 aaaatcttttttaaaagttgcattttgaaaataccttactaactaatgggttgccaaaaa 896
Query: 61 gcttacagattttaattagtaaaatcggttgcacttggtggacacttaaaaaaaagtata 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gcttacagactttaattagtaaaatcggttgcacttggtggacacttaaaaaaaagtata 836
Query: 121 ctcgtgcctcatttctcatgtttttgtattccaatacaggctatttttactactagttgt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 835 ctcgtgcctcatttctcatgttattgtattccaatacaggctatttttactactagttgt 776
Query: 181 ttttgtttgtttgttttgttttgttagtttagttttgtttttgtttcttttgttttgctt 240
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 t----tttgtttgttttgttttgttagtttagttttgtttttgtttcttttgttttgctt 720
Query: 241 tttattaaataagaattaattactgttatgtagctaagacagacaatatgcagttaagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tttattaaataagaattaattactgttatgtagctaagacagacaatatgcagttaagtg 660
Query: 301 gttgctactttattataatctccagtgacttttaacttatttgtctccctttagtgtatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gttgctactttattataatctccagtgacttttaacttatttgtctccctttagtgtatt 600
Query: 361 gcatctttttccaacttacaaaaatgggtcatgcatgtgtaagcatgatacctgtgtcac 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gcatctttttccgacttacaaaaatgggtcatgcatgtgtaagcatgatacctgtgtcac 540
Query: 421 agtagggaagacagaataaagataaagtctatattccaaagtcttagatggattctaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agtagggaagacagaataaagataaagtctatattccaaagtcttagatggattctaaca 480
Query: 481 cctaacaacttgattaaactgtaagtaaaaattaatccttttattttatgaaaaatatat 540
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 479 cctaccaacttgattaaactgtaagtaaaaattaatccttttattttatggaaaatatat 420
Query: 541 aaatgcttattttattttatctccacatgtgattatatagaataaaaatctgagttaaat 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 419 aaatgcttattttattttatctccacgtgtgattatatagaataaaaatctgagttaaat 360
Query: 601 atgagcaaaatttgaccatgaaaatacaacctaatggggatcaatataattgataaagtg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atgagcaaaatttgaccatgaaaatacaacctaatggggatcaatataattgataaagtg 300
Query: 661 ataa 664
||||
Sbjct: 299 ataa 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
