BAC Information

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BAC

Clone NameMSMg01-513C06
Chromosome14 (Build37)
Map Location 19,737,928 - 19,738,593
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
Downstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513C06.T7 (MSMg01no513_c06.b1)MSMg01-513C06.TJ (MSMg01no513_c06.g1)
ACCAG585934AG585935
length731737
length of high quality
(start - end)
637 (43 - 679)666 (72 - 737)
definitionCHROMAT_FILE: MSMg01no513_c06.b1 PHD_FILE: MSMg01no513_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:32 2005CHROMAT_FILE: MSMg01no513_c06.g1 PHD_FILE: MSMg01no513_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTACCTATGAGCCCCATCTTTTGAGGGGGTTATTTGATTTTCT
GGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAAGATAGGTAAAGATGCTTTCCCAATCTATTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTGGCCTTGCAGAAGCTTTGCAGTGTCAGGAG
GTCCCATTTGTCAATCCTCGGTCTTACAGCACAGGCCATTGATGTTCTAT
TCAGGAATTTTTTCCCTATGCCCATATCTTCGAGGCTTTTCCCCATTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTC
TTCTACATGATAACCACCAATTGTGCCAGCACCAATTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACC
ATAGGAGTGTGGGTTCATTTCTGGATCTTCAATTCTATTCCATTGGTCTA
CTTGTCTGTCTCTATACCAATACCATGCAGTTTTTATCACAATTACTCTG
TAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTACTTTTATC
CTTGACAAGAGCTTTTGCTATCCTAGGTTTT
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTGAATAGAAACTGTGCGAATTTGAGA
GCTAACAATCAGGGGTAGGAAAATATGCAGGTTTTCTGAGATGGCAGTAA
AGGAATGGAAAAGAGGTTCAGAGGTTGCTGTGTGCATAGTTCGAGGAGGG
ATATGTGTGCACAGTACATACAGGTGAAGGAGTTAGGCTGCCAAATGAAT
TGTCACGAGAAGGGTAAAGCTAGCTCTTGTGCCTACCTTCTTCCTGAACT
TGGCAAGAAAGCATAGTCTTTCATAATGAAATATGATTTTGGCTGATAAA
GTACTGCTGTGTTGAGGAAGTTCAAGTTCTTTTCTTTTAGTTCAAAAGTT
TTTATTAACATTAGGTGTTGGGGTTTTTATATCAAAATTTTTATATCTGT
TTAGATCATCACATATCTTTTGCCTTTTATTATAGTGACATAATATATCT
TAGTTATTTCTTTTTTTCTAAAGTCCTTCCTGAAAGTTTTAGGACTTCCC
TAAAGTTCACAGCCAAAAGTGGCTAAAGTTTCACTTCTGTCCTAGGAGAA
GTTACTTTTCTGCTCTTACATAAAATACCCAGATTGTCAAATAATCTGGC
TCCAGACCCCAGCTGGAATCCTGGTTTTCCTTCTCGTGAGCTTTAAGCTT
TCTCAGGAAAGTTAAAATATTCTAAAATGAACTAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_c06.g1 MSMg01no513_c06.g1 CHROMAT_FILE:
MSMg01no513_c06.g1 PHD_FILE: MSMg01no513_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:32 2005
         (666 letters)



>mm_chr14_19737728_19738793
          Length = 1066

 Score = 1249 bits (646), Expect = 0.0
 Identities = 661/666 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgaatagaaactgtgcgaatttgagagctaacaatcaggggtaggaaaatatgcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgaatagaaactgtgcgaatttgagagctaacaatcaggggtaggaaaatatgcagg 260

                                                                       
Query: 61  ttttctgagatggcagtaaaggaatggaaaagaggttcagaggttgctgtgtgcatagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ttttctgagatggcagtaaaggaatggaaaagaggttcagaggttgctgtgtgtatagtt 320

                                                                       
Query: 121 cgaggagggatatgtgtgcacagtacatacaggtgaaggagttaggctgccaaatgaatt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 cgaggagggatatgtgtgcacagtacatacaggtgaaggaattaggctgccaaatgaatt 380

                                                                       
Query: 181 gtcacgagaagggtaaagctagctcttgtgcctaccttcttcctgaacttggcaagaaag 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatgagaagggtaaagctagctcttgtgcctaccttcttcctgaacttggcaagaaag 440

                                                                       
Query: 241 catagtctttcataatgaaatatgattttggctgataaagtactgctgtgttgaggaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catagtctttcataatgaaatatgattttggctgataaagtactgctgtgttgaggaagt 500

                                                                       
Query: 301 tcaagttcttttcttttagttcaaaagtttttattaacattaggtgttggggtttttata 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaagttcttttcttttagttcacaagtttttattaacattaggtgttggggtttttata 560

                                                                       
Query: 361 tcaaaatttttatatctgtttagatcatcacatatcttttgccttttattatagtgacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaaatttttatatctgtttagatcatcacatatcttttgccttttattatagtgacat 620

                                                                       
Query: 421 aatatatcttagttatttctttttttctaaagtccttcctgaaagttttaggacttccct 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatatatcttaattatttctttttttctaaagtccttcctgaaagttttaggacttccct 680

                                                                       
Query: 481 aaagttcacagccaaaagtggctaaagtttcacttctgtcctaggagaagttacttttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagttcacagccaaaagtggctaaagtttcacttctgtcctaggagaagttacttttct 740

                                                                       
Query: 541 gctcttacataaaatacccagattgtcaaataatctggctccagaccccagctggaatcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctcttacataaaatacccagattgtcaaataatctggctccagaccccagctggaatcc 800

                                                                       
Query: 601 tggttttccttctcgtgagctttaagctttctcaggaaagttaaaatattctaaaatgaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggttttccttctcgtgagctttaagctttctcaggaaagttaaaatattctaaaatgaa 860

                 
Query: 661 ctaaac 666
           ||||||
Sbjct: 861 ctaaac 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)