Query= MSMg01no513_f09.b1 MSMg01no513_f09.b1 CHROMAT_FILE:
MSMg01no513_f09.b1 PHD_FILE: MSMg01no513_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:48 2005
(672 letters)
>mm_chr14_25990191_25991262
Length = 1072
Score = 1243 bits (643), Expect = 0.0
Identities = 662/669 (98%), Gaps = 2/669 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgtggtttaggactgtgatgcaaagcaggaacaatggggactgaggtggctg 64
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 203 gaattcagcgtggtttaggagtgtgatgcaaagcaggaacaatggggactgaggaggctg 262
Query: 65 gaattccggaccctgagtctctcaagattctctcctgagcaccaggtagttagcctccca 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaattctggaccctgagtctctcaagattctctcctgagcaccaggtagttagcctccca 322
Query: 125 gagagcatcttccctatcactgacccactgcctccacacactgtctcttccaacctttgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagagcatcttccctatcactgacccactgcctccacacactgtctcttccaacctttgc 382
Query: 185 aatgacaatgtcttgtcacccacctcttagctccccgaccggcctctcctgacctcaacc 244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 383 aatgacaatgtcttgtcacccacctcttagctccccgaccagcctctcctgacctcaacc 442
Query: 245 tgtccacctctacccacctaggcccgactccttgaggccttcactgccatcatccctacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtccacctctacccacctaggcccgactccttgaggccttcactgccatcatccctacc 502
Query: 305 tacatccattgttgctcttttctattcccctccctccttctgcggtagaactcaaataca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tacatccattgttgctcttttctattcccctccctccttctgcggtagaactcaaataca 562
Query: 365 acccaatctcacctgttatttcctggacacctacaacaccatccagtgtctgcaaagatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acccaatctcacctgttatttcctggacacctacaacaccatccagtgtctgcaaagatc 622
Query: 425 acctcaagactacaaataggtgctggagttccaactattaaattgcacatatcagaaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acctcaagactacaaataggtgctggagttccaactattaaattgcacatatcagaaaat 682
Query: 485 ataaataaaagtaggatttgtgatagcacttgttaaaagagacacacaaacatagacgca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ataaataaaagtaggatttgtgatagcacttgttaaaagagacacacaaacatagacgca 742
Query: 545 cacacacacacac--tgatgaaactgaaagcaacatcttcactggagttgtggcttctct 602
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cacacacacacacactgatgaaactgaaagcaacatcttcactggagttgtggcttctct 802
Query: 603 gaaggcaagtgtttactgggaaagagacgaataaaaggatattgcagaagaccctgtagc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaaggcaagtgtttactgggaaagagacgaataaaaggatattgcagaagaccctgtagc 862
Query: 663 ctctgccat 671
|||||||||
Sbjct: 863 ctctgccat 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_f09.g1 MSMg01no513_f09.g1 CHROMAT_FILE:
MSMg01no513_f09.g1 PHD_FILE: MSMg01no513_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:48 2005
(604 letters)
>mm_chr14_26166140_26167143
Length = 1004
Score = 1168 bits (604), Expect = 0.0
Identities = 604/604 (100%)
Strand = Plus / Minus
Query: 1 tgaatctggtgatgtctctggagggagcccttaccatatcacagcacagatggcatcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgaatctggtgatgtctctggagggagcccttaccatatcacagcacagatggcatcatg 745
Query: 61 gcgggtgtgtgagtgatgagacaaatcgggaagccagctatttttagtgggactggttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcgggtgtgtgagtgatgagacaaatcgggaagccagctatttttagtgggactggttct 685
Query: 121 ttaaagagaactggctcttacaggaatgaagtgaggtcccaggagagttaccttaatacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttaaagagaactggctcttacaggaatgaagtgaggtcccaggagagttaccttaatacc 625
Query: 181 accacaaggcagtgccccagtgacctccctccctcctgctcgatgccacctctcaaaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 accacaaggcagtgccccagtgacctccctccctcctgctcgatgccacctctcaaaggc 565
Query: 241 ctaccatccttcataccagcacactcaaggaccaaagttttatcatataaaccacacttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctaccatccttcataccagcacactcaaggaccaaagttttatcatataaaccacacttg 505
Query: 301 aaccattgcaggaggggacactgaaccttgagatctgagtctaaggtcagggaagggtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaccattgcaggaggggacactgaaccttgagatctgagtctaaggtcagggaagggtgt 445
Query: 361 gtagaagttaaggaccttggcttgttcaaggctgttgtttttgctcagagtggagggaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtagaagttaaggaccttggcttgttcaaggctgttgtttttgctcagagtggagggaga 385
Query: 421 gtgatggcccggggccagcagtaggattgcatatggctttgcaaggcaggaaaggggctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgatggcccggggccagcagtaggattgcatatggctttgcaaggcaggaaaggggctc 325
Query: 481 aagttttattccaaccagatgaggagacttcagagggttttaaacagacaattgatggga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagttttattccaaccagatgaggagacttcagagggttttaaacagacaattgatggga 265
Query: 541 tccaattactttccaaattaattgaaagtaggagattgtgagttgaagttggaggggagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccaattactttccaaattaattgaaagtaggagattgtgagttgaagttggaggggagc 205
Query: 601 cagg 604
||||
Sbjct: 204 cagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
